Pairwise Alignments

Query, 420 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 408 a.a., Nitrate-binding regulatory protein (nasS) (from data) from Pseudomonas simiae WCS417

 Score =  452 bits (1163), Expect = e-132
 Identities = 215/382 (56%), Positives = 285/382 (74%), Gaps = 3/382 (0%)

Query: 38  WAAGSDAPEKKEIRVGFIPLTDCSSVVMAAVKKFDEKYGIKIIPSKESSWASVRDKLVSG 97
           W  GSDAPEK  + +GF+ L+DC+S+V+AA + F + YG+ +   +++SWA++RDKLVSG
Sbjct: 16  WVNGSDAPEKSSLDLGFMALSDCASMVVAATQGFAQPYGLTLNLKRQTSWANLRDKLVSG 75

Query: 98  ELDAAHVLYGLVYGLQLGVSG-PQHDMAMLMSLNNNGQAITLSNQLKQAGVTDAASLKKM 156
           ELDAAH LYGL+Y + LG+ G    DMA+LM LN NGQ+I LS  L+Q GV    +L + 
Sbjct: 76  ELDAAHSLYGLIYAVHLGIGGVAPTDMAVLMGLNQNGQSINLSRGLQQQGVITPEALDRH 135

Query: 157 VDASAKGTYTFAQTFPTGTHAMWLYYWLANAGIHPFNDVRNVVVPPPQMVVNMKIGNMSG 216
           V  S +   TFAQTFPTGTHAMWLYYWLA+ GIHP  DV +VVVPPPQMV +++ G + G
Sbjct: 136 VHQS-RTKLTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRIDG 194

Query: 217 YCVGEPWNQRAIQDDIGFTAATSQEIWPDHPEKILGTTSAWVAANPNAARALTAAVLDAS 276
           +CVGEPW   A++ + GFT AT+Q IWPDHPEK+LG T A+V   PN AR L  A+L+AS
Sbjct: 195 FCVGEPWCASAVKQNQGFTLATTQAIWPDHPEKVLGCTQAFVDQYPNTARVLVMAILEAS 254

Query: 277 RWIDTSDANRIETAQVVAARAYINTPVATIQGRMLGDYENGLGKKWKDAHSMRFFNDGAV 336
           R+I+ S  NR  TAQ+++ R Y++ P+  I+ R+LG Y++GLG  W+D H++RFF DG V
Sbjct: 255 RFIEESSENRRSTAQLLSGREYLDAPLDCIEPRLLGTYDDGLGNHWQDPHALRFFADGEV 314

Query: 337 NYPYLSDGMWFLTQHKRWGLLDKDPDYLAVAKKINRIDVYKQAATAVGGINLPSGDMRSS 396
           N PYLSDGMWF+TQ +RWGLL +DPDYL VA+++ ++ +Y+QAA A+ GI     DMRSS
Sbjct: 315 NLPYLSDGMWFMTQFRRWGLLREDPDYLGVARQVQQLPLYRQAAAAL-GIATKHPDMRSS 373

Query: 397 TLMDGKVWDGSNPAEYANSFAM 418
            L+DGKVWDGS+PA+YA SF +
Sbjct: 374 QLIDGKVWDGSDPADYARSFRL 395