Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 842 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  673 bits (1737), Expect = 0.0
 Identities = 358/847 (42%), Positives = 533/847 (62%), Gaps = 43/847 (5%)

Query: 30  NLTARSFLLKPLSFFILLSLPGLAFSAETFNPEMLKSIGDGGDLQGVNLD-YFAEKGGQM 88
           N T+R F    L+  I  +LP  A    TFNP  L+ +   G  Q V+L  Y + K   +
Sbjct: 10  NKTSR-FTQSALALMIAGTLPAYA---GTFNPRFLEDVP--GIDQHVDLSMYESNKAEHL 63

Query: 89  PGTYQVDVYLNNQQVDSRNVEFVSLPDAPGKLYG-----AITPAEMADYGVKLDVFPDLK 143
           PG Y+V V +N ++++SR +EF +  +A     G      ++  ++ D GV++D FP LK
Sbjct: 64  PGKYRVSVVVNEKKMESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALK 123

Query: 144 AVAPDAKLTRPLSAYVPQATENLDLNRKRYDITVPQIGVNVRPRNSVDPKRWDNGIPAFM 203
              P+A +       +PQA  + D   +   ++ PQ  +    R +V   +WD G+ A +
Sbjct: 124 MAPPEACVA--FDDIIPQAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNALL 181

Query: 204 LNYSYSGSTTQRD-----NSGQSQSNFVNLRSGANLGAWRLRNYSTYNNQQNEGSHGGDD 258
           ++Y++SGS    D      S  S S ++NLRSG NLGAWRLRNYST+   +N+G++  D+
Sbjct: 182 VDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWT--RNDGNNTWDN 239

Query: 259 TNTSNFESINTYVQRDVRFLQGGQLTLGEYSTPADVFDSIQFTGAQLASDDQMLPDSMSQ 318
             TS        + R +  L+  QLTLG+ ST  D+FDS+Q  G QL SD++MLPDS   
Sbjct: 240 IGTS--------LSRAIVPLKS-QLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRG 290

Query: 319 FAPTVRGIAKSNAQVTIKQNGYVIYQSNVSPGPFAITDLYPSGNGGDMEVTVTESDGSAT 378
           FAP +RGIAKSNA+VT++QN YVIY++ V PG F I DLYP+ N GD+ VT+ ESDGS  
Sbjct: 291 FAPVIRGIAKSNAEVTVEQNNYVIYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQ 350

Query: 379 KFNIATSSVPILQREGRFKYNMALGKYRTGNDDTETPNFIQLSNIYGLTARTTVYGGVQY 438
           KF    SSV +LQREG  KY+++ G+YR GN ++  P F QL  +YGL    TVYGG  +
Sbjct: 351 KFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIF 410

Query: 439 AENYRAANVGVGFDLGSAGAVSFDATQATSEFEDSTDTQKGQSYRAMYAKNFEATDTNLQ 498
           +++Y +   G+G + G  GA+S D TQA S+  +  +  +GQSYR +Y+K+F  + T+ +
Sbjct: 411 SDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANE-ENSEGQSYRFLYSKSFN-SGTDFR 468

Query: 499 IAGYRYSTEGYYAFSDVQDYQKETDSDFDNYNRSHNQRSKMQLSVNQSIGDYGSIYVSGS 558
           + GY+YST GYY F +  D + + DS +  Y++    RS++Q +V Q +G +GS+Y + +
Sbjct: 469 LLGYKYSTSGYYTFQEATDVRSDADSSYSQYHK----RSQIQGNVTQQLGAWGSVYFNVT 524

Query: 559 QQDYWGGDGKEQLLQLGYNTSIYGISYGFNYNYSKNPGMTEADQVFAFNMSVPLDRFIGS 618
           QQDYW  +GK++ L  GYN  I  ++Y   Y ++K+P   E+D++ +F+MS+PL R    
Sbjct: 525 QQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKSPEWDESDRLLSFSMSIPLGR---- 580

Query: 619 SGASATYNMSSKKHGSTVQQAGVSGTLLQGDNLSYSVQQGYENQGNGASGNASMDYKGGS 678
               + Y++++ +HG T QQ GVSGT L+  NL+YSVQ+GY + G G SG+ ++DY+GG 
Sbjct: 581 --VWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGV 638

Query: 679 GEGNLGYSYDQESRQWSYGIQGGILLHENGITLSQPLGDTVTLVKAPGADDVNVENNSGV 738
           G  +LGY+Y+++ +Q +YG++GG++ H  GITLSQPLG+++ ++ APGA   +V NN GV
Sbjct: 639 GSASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGV 698

Query: 739 HTDWRGYAVVPYAQPYRKNSVTLETESFADDVDMDMNTQTVIPTRGAVVRAEFKTRVGQR 798
             DW G AVVPY  PYR+  V+L ++S  + VD+D  +  V+PTRGA+VRA F TRVG R
Sbjct: 699 EVDWMGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYR 758

Query: 799 ALVQLL-FMGKPVPFGATVSLLDNDSTVTGIVSDNGEVYLTGLPETGNIMAKWGNGSNEQ 857
            L+ L    GK VPFGAT +LLD     + IV ++G++Y++G+PE G +   WG    +Q
Sbjct: 759 VLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQ 818

Query: 858 CKGAYSL 864
           C+ A++L
Sbjct: 819 CRVAFTL 825