Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 870 a.a., Outer membrane usher protein SfmD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  634 bits (1635), Expect = 0.0
 Identities = 355/859 (41%), Positives = 506/859 (58%), Gaps = 51/859 (5%)

Query: 38  LKPLSFFILLSLPGLAFSAET-FNPEMLKSIGDGGDLQGV-NLDYFAEKGGQMPGTYQVD 95
           L  ++  +L +L  L    E+ FNP  L +     D   V +L  F +   Q PG Y+VD
Sbjct: 18  LSSVALSVLAALCPLTSRGESYFNPAFLSA-----DTASVADLSRFEKGNHQPPGIYRVD 72

Query: 96  VYLNNQQVDSRNVEF----VSLPDAPGKLYGAITPAEMADYGVKLDVFPDLKAVAPDAKL 151
           ++ N++ V ++++ F    V   D  G L    TP  +   GV    FP          +
Sbjct: 73  IWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCI 132

Query: 152 TRPLSAYVPQATENLDLNRKRYDITVPQIGVNVRPRNSVDPKRWDNGIPAFMLNYSYSGS 211
             P    +P A    D    R +I++PQ  +    R  + P+ WD GIPA ++NYS++GS
Sbjct: 133 HLPEK--IPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGS 190

Query: 212 TTQRDNSGQSQSNFVNLRSGANLGAWRLRNYSTYNNQQNEGSHGGDDTNTSNFESINTYV 271
                    S S F++L SG N G WRLRN   +N  + +G H      +  + +I T+V
Sbjct: 191 -----RGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYH------SQRWNNIGTWV 239

Query: 272 QRDVRFLQGGQLTLGEYSTPADVFDSIQFTGAQLASDDQMLPDSMSQFAPTVRGIAKSNA 331
           QR +  L+  +L +G+ +T  DVFDS+ F GA+L S D M PDS+  +APTVRGIA++ A
Sbjct: 240 QRAIIPLKS-ELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAA 298

Query: 332 QVTIKQNGYVIYQSNVSPGPFAITDLYPSGNGGDMEVTVTESDGSATKFNIATSSVPILQ 391
           ++TI+QNGYVIYQS VSPG FAITDL P+ + GD+EVTV E DGS  ++ +  S+VP+LQ
Sbjct: 299 KLTIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQ 358

Query: 392 REGRFKYNMALGKYRTGNDDTETPNFIQLSNIYGLTARTTVYGGVQYAENYRAANVGVGF 451
           REGR KY++  G +R+GN    +P F Q + I GL A  T YGG Q A+ YRA  VG G 
Sbjct: 359 REGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGR 418

Query: 452 DLGSAGAVSFDATQATSEFEDSTDTQKGQSYRAMYAKNFEATDTNLQIAGYRYSTEGYYA 511
           +LG  GAVS D T A S+  D + T +GQS R +YAK+     TN Q+ GYRYST G+Y 
Sbjct: 419 NLGDWGAVSVDVTHARSQLADDS-THQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYT 477

Query: 512 FSDV-----QDYQKETDSD---------FDNYNRSHNQRSKMQLSVNQSIGDYGSIYVSG 557
             DV     + Y  E DSD            +N  ++++ + Q++++Q++GDYGS+Y+SG
Sbjct: 478 LDDVAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSG 537

Query: 558 SQQDYWGGDGKEQLLQLGYNTSIYGISYGFNYNYSKNPGMTEADQVFAFNMSVPLDRFIG 617
           SQQ+YW         QLGY +   GISY  ++++S++ G + AD++ AFNMSVP     G
Sbjct: 538 SQQNYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTG 597

Query: 618 SSGAS--------ATYNMSSKKHGSTVQQAGVSGTLLQGDNLSYSVQQGYENQGNGASGN 669
              A         AT+N +  + G    Q GV GTLL+G NLSYSV QG  +  NG SG+
Sbjct: 598 RRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQG-RSSSNGYSGS 656

Query: 670 ASMDYKGGSGEGNLGYSYDQESRQWSYGIQGGILLHENGITLSQPLGDTVTLVKAPGADD 729
           AS  ++   G   +GY+YD++   +++ + GG++ H +GIT SQPLGDT  L+KAPGA  
Sbjct: 657 ASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKG 716

Query: 730 VNVENNSGVHTDWRGYAVVPYAQPYRKNSVTLETESFADDVDMDMNTQTVIPTRGAVVRA 789
           V +EN +GV TDWRGYAV+PYA  YR N V L+T +  +  D++ N  +V+PT GA+VRA
Sbjct: 717 VRIENQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRA 776

Query: 790 EFKTRVGQRALVQLLFMGKPVPFGATVSLLDNDSTVTGIVSDNGEVYLTGLPETGNIMAK 849
            F TR+G RA++     G+P+PFGA V   +  S +T +V D+G++YL+GLP  G +  +
Sbjct: 777 AFDTRIGVRAIITARLGGRPLPFGAIVR--ETASGITSMVGDDGQIYLSGLPLKGELFIQ 834

Query: 850 WGNGSNEQCKGAYSLTSSN 868
           WG G N +C   Y+L   +
Sbjct: 835 WGEGKNARCIAPYALAEDS 853