Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 869 a.a., Outer membrane usher protein SfmD from Escherichia coli ECRC99

 Score =  619 bits (1595), Expect = 0.0
 Identities = 340/873 (38%), Positives = 519/873 (59%), Gaps = 51/873 (5%)

Query: 35  SFLLKPLSFFILLSLPG-LAFSAETFNPEMLKSIGDGGDLQGVNLDYFAEKGGQMPGTYQ 93
           ++ L  + +  L  LP  L+++   FNP  L   G        +L  F     Q  G Y+
Sbjct: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTFV----ADLSRFERGNHQPAGVYR 69

Query: 94  VDVYLNNQQVDSRNVEFVSLPDAPGKLYGAITPAE----MADYGVKLDVFPDLKAVAPDA 149
           VD++ N++ + S+++ F S  +  G   G + P      +   G+    FP+L A   + 
Sbjct: 70  VDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPEL-AQQQNN 128

Query: 150 KLTRPLSAYVPQATENLDLNRKRYDITVPQIGVNVRPRNSVDPKRWDNGIPAFMLNYSYS 209
           K    L A VP AT N D    R +IT+PQI +       + P+ WD GIPA +LNY+++
Sbjct: 129 KCINLLKA-VPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFT 187

Query: 210 GSTTQRDNSGQSQSNFVNLRSGANLGAWRLRNYSTYNNQQNEGSHGGDDTNTSNFESINT 269
           G+   R N   S   F +  SG N+G WRLRN  ++N  +  G H      +  + +I T
Sbjct: 188 GN---RGNGNDSY--FFSELSGINIGPWRLRNNGSWNYFRGNGYH------SEQWNNIGT 236

Query: 270 YVQRDVRFLQGGQLTLGEYSTPADVFDSIQFTGAQLASDDQMLPDSMSQFAPTVRGIAKS 329
           +VQR +  L+  +L +G+ +T +D+FD + F G +L S D M PDS   FAPTVRGIA++
Sbjct: 237 WVQRAIIPLKS-ELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIART 295

Query: 330 NAQVTIKQNGYVIYQSNVSPGPFAITDLYPSGNGGDMEVTVTESDGSATKFNIATSSVPI 389
            AQ+TI+QNG++IYQS VSPG F ITDL+P+ + GD++VT+ E DG+   + I  S+VPI
Sbjct: 296 AAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPI 355

Query: 390 LQREGRFKYNMALGKYRTGNDDTETPNFIQLSNIYGLTARTTVYGGVQYAENYRAANVGV 449
           LQREGRFK+++  G +R+GN    +P F Q + + GL    T YGG Q + NY A  +G+
Sbjct: 356 LQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGL 415

Query: 450 GFDLGSAGAVSFDATQATSEFEDSTDTQKGQSYRAMYAKNFEATDTNLQIAGYRYSTEGY 509
           G +LG+ GAVS D T A S+  D +   +G S R +YAK+     TN Q+ GYRYST+G+
Sbjct: 416 GRNLGNWGAVSLDVTHARSQLADDS-RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGF 474

Query: 510 YAFSDVQDYQK----ETDSDFDNYNRS-------HN----QRSKMQLSVNQSIGDYGSIY 554
           Y   DV  Y++    E D D+D  +R        HN    ++ ++QL+++QS+ D+GS+Y
Sbjct: 475 YTLDDVA-YRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLY 533

Query: 555 VSGSQQDYWGGDGKEQLLQLGYNTSIYGISYGFNYNYSKNPGMTEADQVFAFNMSVPLD- 613
           +SG+ Q YW     +   Q+GY +S  GISY  +++++++ G+ + +++   N+SVP + 
Sbjct: 534 ISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNV 593

Query: 614 -------RFIGSSGASATYNMSSKKHGSTVQQAGVSGTLLQGDNLSYSVQQGYENQGNGA 666
                  R      A A++N +   +G     AGV GTLL+G NLSY V QG +   NG 
Sbjct: 594 LTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGY 652

Query: 667 SGNASMDYKGGSGEGNLGYSYDQESRQWSYGIQGGILLHENGITLSQPLGDTVTLVKAPG 726
           +G+A+ +++   G   +GY+YD++    ++ + GG++ HENGITLSQPLGDT  L+KAPG
Sbjct: 653 TGSATANWQAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPG 712

Query: 727 ADDVNVENNSGVHTDWRGYAVVPYAQPYRKNSVTLETESFADDVDMDMNTQTVIPTRGAV 786
           A  V +EN +G+ TDWRGYAV+PYA  YR N + L+T +  + +D++ N  +V+PT+GA+
Sbjct: 713 AGGVRIENQTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGAL 772

Query: 787 VRAEFKTRVGQRALVQLLFMGKPVPFGATVSLLDNDSTVTGIVSDNGEVYLTGLPETGNI 846
           VRA F TR+G RAL+ +   GKPVPFG+ V   +N + +T +V D+G+VYL+G P +G +
Sbjct: 773 VRANFDTRIGVRALITVTQGGKPVPFGSLVR--ENSTGITSMVGDDGQVYLSGAPLSGEL 830

Query: 847 MAKWGNGSNEQCKGAYSLTSSNASDPSALIKQI 879
           + +WG+G+N +C   Y L   +      +I  +
Sbjct: 831 LVQWGDGANSRCIAHYVLPKQSLQQAVTVISAV 863