Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 878 a.a., fimbrial usher FimD from Escherichia coli ECRC62

 Score =  699 bits (1804), Expect = 0.0
 Identities = 378/872 (43%), Positives = 538/872 (61%), Gaps = 51/872 (5%)

Query: 43  FFILLSLPGLAFSAET--------FNPEMLKSIGDGGDLQGV-NLDYFAEKGGQMPGTYQ 93
           FF+ L +   AF+A+T        FNP  L       D Q V +L  F       PGTY+
Sbjct: 26  FFVRLFV-ACAFAAQTPLSSAELYFNPRFLAD-----DPQAVADLSRFENGQELPPGTYR 79

Query: 94  VDVYLNNQQVDSRNVEFVSLPDAPGKLYGAITPAEMADYGVKLDVFPDLKAVAPDAKLTR 153
           VD+YLNN  + +R+V F +  D+   +   +T A++A  G+       +  +A DA +  
Sbjct: 80  VDIYLNNGYMATRDVTF-NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACV-- 136

Query: 154 PLSAYVPQATENLDLNRKRYDITVPQIGVNVRPRNSVDPKRWDNGIPAFMLNYSYSGSTT 213
           PL++ +  AT +LD+ ++R ++T+PQ  ++ R R  + P+ WD GI A +LNY++SG++ 
Sbjct: 137 PLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSV 196

Query: 214 QRDNSGQSQSNFVNLRSGANLGAWRLRNYSTYNNQQNEGSHGGDDTNTSNFESINTYVQR 273
           Q    G S   ++NL+SG N+GAWRLR+ +T++   ++ S G    + + ++ INT+++R
Sbjct: 197 QNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSG----SKNKWQHINTWLER 252

Query: 274 DVRFLQGGQLTLGEYSTPADVFDSIQFTGAQLASDDQMLPDSMSQFAPTVRGIAKSNAQV 333
           D+  L+  +LTLG+  T  D+FD I F G QLASDD MLPDS   FAP + GIA+  AQV
Sbjct: 253 DIIPLRS-RLTLGDGYTQGDIFDGINFRGVQLASDDNMLPDSQRGFAPVIHGIARGTAQV 311

Query: 334 TIKQNGYVIYQSNVSPGPFAITDLYPSGNGGDMEVTVTESDGSATKFNIATSSVPILQRE 393
           TIKQNGY IY S V PGPF I D+Y +GN GD++VT+ E+DGS   F +  SSVP+LQRE
Sbjct: 312 TIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQRE 371

Query: 394 GRFKYNMALGKYRTGNDDTETPNFIQLSNIYGLTARTTVYGGVQYAENYRAANVGVGFDL 453
           G  +Y++  G+YR+GN   E P F Q + ++GL A  T+YGG Q A+ YRA N G+G ++
Sbjct: 372 GHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNM 431

Query: 454 GSAGAVSFDATQATSEFEDSTDTQKGQSYRAMYAKNFEATDTNLQIAGYRYSTEGYYAFS 513
           G+ GA+S D TQA S   D +    GQS R +Y K+   + TN+Q+ GYRYST GY+ F+
Sbjct: 432 GALGALSVDMTQANSTLPDDSQ-HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490

Query: 514 D-----VQDYQKETDSDF--------DNYNRSHNQRSKMQLSVNQSIGDYGSIYVSGSQQ 560
           D     +  Y  ET            D YN ++N+R K+QL+V Q +G   ++Y+SGS Q
Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQ 550

Query: 561 DYWGGDGKEQLLQLGYNTSIYGISYGFNYNYSKNPGMTEADQVFAFNMSVPLDRFIGSSG 620
            YWG    ++  Q G NT+   I++  +Y+ +KN      DQ+ A N+++P   ++ S  
Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDS 610

Query: 621 ------ASATYNMSSKKHGSTVQQAGVSGTLLQGDNLSYSVQQGYENQGNGASGN---AS 671
                 ASA+Y+MS   +G     AGV GTLL+ +NLSYSVQ GY   G+G SG+   A+
Sbjct: 611 KSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYAT 670

Query: 672 MDYKGGSGEGNLGYSYDQESRQWSYGIQGGILLHENGITLSQPLGDTVTLVKAPGADDVN 731
           ++Y+GG G  N+GYS+  + +Q  YG+ GG+L H NG+TL QPL DTV LVKAPGA D  
Sbjct: 671 LNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAK 730

Query: 732 VENNSGVHTDWRGYAVVPYAQPYRKNSVTLETESFADDVDMDMNTQTVIPTRGAVVRAEF 791
           VEN +GV TDWRGYAV+PYA  YR+N V L+T + AD+VD+D     V+PTRGA+VRAEF
Sbjct: 731 VENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEF 790

Query: 792 KTRVGQRALVQLLFMGKPVPFGATVSLLDNDSTVTGIVSDNGEVYLTGLPETGNIMAKWG 851
           K RVG + L+ L    KP+PFGA V+     S  +GIV+DNG+VYL+G+P  G +  KWG
Sbjct: 791 KARVGIKLLMTLSHNNKPLPFGAMVT--SESSQSSGIVADNGQVYLSGMPLAGKVQVKWG 848

Query: 852 NGSNEQCKGAYSLTSSNASDPSALIKQITAQC 883
              N  C   Y L   +      L+ Q++A+C
Sbjct: 849 EEENAHCIANYQLPPESQQQ---LLTQLSAEC 877