Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 878 a.a., fimbrial usher FimD from Escherichia coli ECRC101

 Score =  698 bits (1802), Expect = 0.0
 Identities = 373/848 (43%), Positives = 527/848 (62%), Gaps = 42/848 (4%)

Query: 59  FNPEMLKSIGDGGDLQGV-NLDYFAEKGGQMPGTYQVDVYLNNQQVDSRNVEFVSLPDAP 117
           FNP  L       D Q V +L  F       PGTY+VD+YLNN  + +R+V F +  D+ 
Sbjct: 49  FNPRFLAD-----DPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF-NTGDSE 102

Query: 118 GKLYGAITPAEMADYGVKLDVFPDLKAVAPDAKLTRPLSAYVPQATENLDLNRKRYDITV 177
             +   +T A++A  G+       +  +A DA +  PL+  V  AT +LD+ ++R ++T+
Sbjct: 103 QGIVPCLTRAQLASMGLNTASVAGMNLLADDACV--PLTTMVQDATAHLDVGQQRLNLTI 160

Query: 178 PQIGVNVRPRNSVDPKRWDNGIPAFMLNYSYSGSTTQRDNSGQSQSNFVNLRSGANLGAW 237
           PQ  ++ R R  + P+ WD GI A +LNY++SG++ Q    G S   ++NL+SG N+GAW
Sbjct: 161 PQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAW 220

Query: 238 RLRNYSTYNNQQNEGSHGGDDTNTSNFESINTYVQRDVRFLQGGQLTLGEYSTPADVFDS 297
           RLR+ +T++   ++ S G    + + ++ INT+++RD+  L+  +LTLG+  T  D+FD 
Sbjct: 221 RLRDNTTWSYNSSDRSSG----SKNKWQHINTWLERDIIPLRS-RLTLGDGYTQGDIFDG 275

Query: 298 IQFTGAQLASDDQMLPDSMSQFAPTVRGIAKSNAQVTIKQNGYVIYQSNVSPGPFAITDL 357
           I F GAQLASDD MLPDS   FAP + GIA+  AQVTIKQNGY IY S V PGPF I D+
Sbjct: 276 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 335

Query: 358 YPSGNGGDMEVTVTESDGSATKFNIATSSVPILQREGRFKYNMALGKYRTGNDDTETPNF 417
           Y +GN GD++VT+ E+DGS   F +  SSVP+LQREG  +Y++  G+YR+GN   E P F
Sbjct: 336 YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRF 395

Query: 418 IQLSNIYGLTARTTVYGGVQYAENYRAANVGVGFDLGSAGAVSFDATQATSEFEDSTDTQ 477
            Q + ++GL A  T+YGG Q A+ YRA N G+G ++G+ GA+S D TQA S   D +   
Sbjct: 396 FQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQ-H 454

Query: 478 KGQSYRAMYAKNFEATDTNLQIAGYRYSTEGYYAFSD-----VQDYQKETDSDF------ 526
            GQS R +Y K+   + TN+Q+ GYRYST GY+ F+D     +  Y  ET          
Sbjct: 455 DGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPK 514

Query: 527 --DNYNRSHNQRSKMQLSVNQSIGDYGSIYVSGSQQDYWGGDGKEQLLQLGYNTSIYGIS 584
             D YN ++N+R K+QL+V Q +G   ++Y+SGS Q YWG    ++  Q G NT+   I+
Sbjct: 515 FTDYYNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDIN 574

Query: 585 YGFNYNYSKNPGMTEADQVFAFNMSVPLDRFIGSSG------ASATYNMSSKKHGSTVQQ 638
           +  +Y+ +KN      DQ+ A N+++P   ++ S        ASA+Y+MS   +G     
Sbjct: 575 WTLSYSLTKNAWQKGRDQMLARNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 639 AGVSGTLLQGDNLSYSVQQGYENQGNGASGN---ASMDYKGGSGEGNLGYSYDQESRQWS 695
           AGV GTLL+ +NLSYSVQ GY   G+G SG+   A+++Y+GG G  N+GYS+  + +Q  
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 696 YGIQGGILLHENGITLSQPLGDTVTLVKAPGADDVNVENNSGVHTDWRGYAVVPYAQPYR 755
           YG+ GG+L H NG+TL QPL DTV LVKAPGA D  VEN +GV TDWRGYAV+PYA  YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 754

Query: 756 KNSVTLETESFADDVDMDMNTQTVIPTRGAVVRAEFKTRVGQRALVQLLFMGKPVPFGAT 815
           +N V L+T + AD+VD+D     V+PTRGA+VRAEFK RVG + L+ L    KP+PFGA 
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 816 VSLLDNDSTVTGIVSDNGEVYLTGLPETGNIMAKWGNGSNEQCKGAYSLTSSNASDPSAL 875
           V+     S  +GIV+DNG+VYL+G+P  G +  KWG   N  C   Y L   +      L
Sbjct: 815 VT--SESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQ---L 869

Query: 876 IKQITAQC 883
           + Q++A+C
Sbjct: 870 LTQLSAEC 877