Pairwise Alignments

Query, 884 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli ECRC100

 Score =  609 bits (1570), Expect = e-178
 Identities = 329/830 (39%), Positives = 506/830 (60%), Gaps = 40/830 (4%)

Query: 59  FNPEMLKSIGDGGDLQGVNLDYFAEKGGQMPGTYQVDVYLNNQQVDSRNVEFVSLPDAPG 118
           F+P ML++   G  +Q  +L  F++K  Q+PGTYQVD++LN ++V  + + F +  +A  
Sbjct: 45  FDPIMLETTKSG--MQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTA--NAEQ 100

Query: 119 KLYGAITPAEMADYGVKLDVFPDLKAVAPDAKLTRPLSAYVPQATENLDLNRKRYDITVP 178
            L    T  ++ + G+K+D  P L A   D  +   L   +P      D N +R ++++P
Sbjct: 101 LLQPQFTVEQLRELGIKVDEIPAL-AEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIP 159

Query: 179 QIGVNVRPRNSVDPKRWDNGIPAFMLNYSYSGSTTQRDNSGQSQSNFVNLRSGANLGAWR 238
           QI +    R  V P RWD+GIP    NYS++GS  +     +SQ  ++N+++GAN G WR
Sbjct: 160 QIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWR 219

Query: 239 LRNYSTYNNQQNEGSHGGDDTNTSNFESINTYVQRDVRFLQGGQLTLGEYSTPADVFDSI 298
           LRNYST+                S++ +I++Y+QRD++ L+  QL LGE +T   +F S 
Sbjct: 220 LRNYSTWTRNDQ----------ASSWNTISSYLQRDIKALKS-QLLLGESATSGSIFSSY 268

Query: 299 QFTGAQLASDDQMLPDSMSQFAPTVRGIAKSNAQVTIKQNGYVIYQSNVSPGPFAITDLY 358
            FTG QLASDD MLP+S   FAPTVRGIA S+A VTI+QNGYVIYQSNV  G F I DLY
Sbjct: 269 NFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLY 328

Query: 359 PSGNGGDMEVTVTESDGSATKFNIATSSVPILQREGRFKYNMALGKYRT-GNDDTETPNF 417
           PS N GD+EVT+ ESDG+  +F    SS+P++QR G  KY+   G+YR   N D++ P F
Sbjct: 329 PSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEF 388

Query: 418 IQLSNIYGLTARTTVYGGVQYAENYRAANVGVGFDLGSAGAVSFDATQATSEFEDSTDTQ 477
            + + IYGL    T+YGG+  +E+Y A  +G+G  LG+ GA+S D  +A ++F D+  + 
Sbjct: 389 AEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQF-DNQHSF 447

Query: 478 KGQSYRAMYAKNFEATDTNLQIAGYRYSTEGYYAFSDVQDYQKETDSDFDNYNRSHNQRS 537
            G  +R  Y K+   T+TN+ ++ YRY+ +GY++F          +++  N++ +  Q+S
Sbjct: 448 HGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFD---------EANTRNWDYNSRQKS 498

Query: 538 KMQLSVNQSIGDYGSIYVSGSQQDYWGGDGKEQLLQLGYNTSIYGISYGFNYNYSKNPGM 597
           ++Q +++Q+I D  S+Y SGSQQDYWG + K + + +G +   +GI Y  NY YS+    
Sbjct: 499 EIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQ 558

Query: 598 TEADQVFAFNMSVPLDRFIGSSGASATYNMSSKKHGSTVQQAGVSGTLLQGDNLSYSVQQ 657
              D+  + N+S+PL+R++  S  S  Y M+S+K   T  +  + G+LL    LSYS++Q
Sbjct: 559 NN-DRALSLNLSIPLERWLPRSRVS--YQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQ 615

Query: 658 GYENQGN-GASGNASMDYKGGSGEGNLGYSYDQESRQWSYGIQGGILLHENGITLSQPLG 716
             ++  N  +S NAS  Y+   G  + GYSY  +S Q++YG+ GG+++H +G+TLSQ LG
Sbjct: 616 SLDDDNNHNSSVNAS--YRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLG 673

Query: 717 DTVTLVKAPGADDVNVENNSGVHTDWRGYAVVPYAQPYRKNSVTLETESFADDVDMDMNT 776
           +   L+ A GA  V ++N  G+ TD  GYAVVPY   Y++N ++++T    D+VD++  T
Sbjct: 674 NAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTT 733

Query: 777 QTVIPTRGAVVRAEFKTRVGQRALVQLLFM-GKPVPFGATVSLLDNDSTVTGIVSDNGEV 835
           Q V+P RGA+V A F   +G R LV +    GKP+PFGA  S  ++D+    IV + G +
Sbjct: 734 QFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALAS--NDDTGQQSIVDEGGIL 791

Query: 836 YLTGL-PETGNIMAKWGNGSNEQCKGAYSLTSSNASDPSALIKQITAQCH 884
           YL+G+  ++ +   +WGN +++QC+ A+S      S+P+  + Q TAQCH
Sbjct: 792 YLSGISSKSQSWTVRWGNQADQQCQFAFSTPD---SEPTTSVLQGTAQCH 838