Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  461 bits (1187), Expect = e-134
 Identities = 262/564 (46%), Positives = 361/564 (64%), Gaps = 14/564 (2%)

Query: 3   TELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFS 62
           T+    FA   L+  I++A+   GYE+PS IQ + IP +++G+D++G AQTG+GKTAAF+
Sbjct: 2   TQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFA 61

Query: 63  LPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRA 122
           LP+LH ID + + PQ L+LAPTRELA+QVA A   ++K M GV VVA+YGG     QL+A
Sbjct: 62  LPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 123 LRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEH 182
           +R G Q+VV TPGRL DHL+R    LS ++ LVLDEADEML++GF++D+E I   +P   
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR 181

Query: 183 QTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLE 242
           QT LFSAT+P++IR I  R ++DP+ V+IQ+   T   I Q++  V+  +K  A++  LE
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 243 AEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302
            EDFDA I+FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362
           TDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 363 RTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETL 422
           R     + EV +P A+ + + R+ K    +   +  ++   +  LL +L          L
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAE-STHGDLLDRLTADIGCTPRAL 420

Query: 423 AAALLKMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPARDGDS 482
           AAALL+ A   + L +AA  + K RP       RG         DRP RS DRP R GD 
Sbjct: 421 AAALLRKATNGQALTLAA--IEKERPLVPNSAPRG---------DRPERSGDRPDR-GDR 468

Query: 483 PRRERRDAGE-MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP 541
            RR      E     R  +G  DG+  ++++GAI NEG ++   IG I++  + S +ELP
Sbjct: 469 ERRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELP 528

Query: 542 KGMPGEILSHFTRTRILNKPMNMQ 565
           +    ++L+    TR+  K + ++
Sbjct: 529 EDGLEKLLAKLKDTRVAGKQLKLR 552