Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  466 bits (1198), Expect = e-135
 Identities = 266/567 (46%), Positives = 365/567 (64%), Gaps = 18/567 (3%)

Query: 3   TELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFS 62
           T+    FA L L+  I++A+   GYE+PS IQ + IP +L+G D++G AQTG+GKTAAF+
Sbjct: 2   TQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFA 61

Query: 63  LPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRA 122
           LP+L+ ID S + PQ L+LAPTRELA+QVA A   ++K M GVNVVA+YGG     QLRA
Sbjct: 62  LPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121

Query: 123 LRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEH 182
           +R G Q+VV TPGRL DHL+R    LS +  LVLDEADEML++GF++D+E I   IPA  
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATR 181

Query: 183 QTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLE 242
           QT LFSAT+P +IR I  R +++P+ V+IQ+   T   I Q++  V+  +K  A++R LE
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLE 241

Query: 243 AEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302
            E+FDA I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++A
Sbjct: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362
           TDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361

Query: 363 RTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETL 422
           R     + E  +P A+ + + R+ K  + +   +  ++   +  L  +L          L
Sbjct: 362 RVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEA-THGELFDRLTTDLGCSARAL 420

Query: 423 AAALLKMAQGERPLIVAA----DPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPAR 478
           A+ALL+ A   + L +AA     P+  S  PR E  ERG+RG+R DR DR  R+   P  
Sbjct: 421 ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRA-PLPLA 479

Query: 479 DGDSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTI 538
           +G    R R         R  +G  DG+  ++++GAI NEG ++   IG I++  + S +
Sbjct: 480 EG----RVR--------CRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLV 527

Query: 539 ELPKGMPGEILSHFTRTRILNKPMNMQ 565
           ELP+    ++LS    TR+  K + ++
Sbjct: 528 ELPEDGLEKLLSKLKDTRVAGKQLKLR 554