Pairwise Alignments

Query, 390 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score = 84.0 bits (206), Expect = 7e-21
 Identities = 80/325 (24%), Positives = 136/325 (41%), Gaps = 21/325 (6%)

Query: 39  LCWIFPLLLFGLISSNFSEGTLLDLPVSVVDNDHSPLSKTLIRKLDAGSHAHVQAFEGGL 98
           + W+ PLL   LI   FS G    LP+ V+D DHS LS+ L+R LDA     V       
Sbjct: 28  ISWV-PLLAVFLIWWIFSAGLPERLPIGVLDQDHSSLSRQLVRFLDATPGLRVVQQYSDE 86

Query: 99  PEAEYRLRTAQDYALLYIPNDFEADVLAGKQPSAVLYYNALFYGAGLYSTQDFSGLITEL 158
            E    L +    A + +P D   DV  G+    VL +NA          +D    +  +
Sbjct: 87  GEMARALTSGAVDAAVQLPRDLSRDVKQGRVGQVVLLHNAQLGTHSSLIQRDVRTAVATV 146

Query: 159 NTRYRSIIATEMGKTLP----SLASVDVSYGSLFNASGSYIYYQQFAATIHLLQLFTVTC 214
           +      +  + G+++     S+  +  S  +LFN S  Y  +   A    LL +  +T 
Sbjct: 147 SGGVELAVRNKRGESMTAARVSMEPIKASMVALFNTSTDYEQFLGAALIPALLHILAMTA 206

Query: 215 MIYVMARSQA-------LLSAPSFTLALLGKLAPYTLCFTTLLMAEIAMLV------GFF 261
             + + R          L +AP +  AL        L F +L    IA +V      G+ 
Sbjct: 207 GAWAVGRELRDRSIGAWLGAAPRWHEALAALAGKLALPFLSLSAVAIAAMVWITAGRGWH 266

Query: 262 DARVSGNPLYMLLIGFFYVIAAQSLGLLLFTFTKTTITAYTMMGIFVSIALTFSGMAVPV 321
                G  L+ L++   ++  + +LG    + T++  TA +  G   + A  F G+  P+
Sbjct: 267 PVGSLGWTLFALVV---FLALSIALGAFASSLTRSLRTALSATGFITAPAFAFGGVGFPL 323

Query: 322 LSMPLPARIISGIEPLSYALAAMFD 346
           ++MP  AR+ + + P ++ +    +
Sbjct: 324 VAMPFFARMWANLLPYTHYIRVQME 348