Pairwise Alignments

Query, 647 a.a., exoribonuclease II from Rahnella sp. WP5

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  205 bits (521), Expect = 8e-57
 Identities = 197/671 (29%), Positives = 304/671 (45%), Gaps = 73/671 (10%)

Query: 24  GIVKGTEKGFGFL-EVDGQKSYFIPPPYMKKVMHGDRVIA---SLQTEKEREVVQPETLV 79
           G V G   GFGFL   DG +  F+ P  M+ V  GDR +A    +     RE V  E + 
Sbjct: 91  GRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDRGLARVSGVDRRGRREGVLVEVIS 150

Query: 80  EPFLSRFVGRVTKKDDRLSIIPDHPLLRDAIQCRVARNINHEVSDGDWCVAEMRRHPLKE 139
               S  VGR  ++     + PD+P ++  +     RN   ++  G +   ++   P   
Sbjct: 151 RAHES-VVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKI--GQFVEIKITHWPTPR 207

Query: 140 GDHSFQAEITEWITTGADDLAPWW---VTLARHNLEREAPKSDIAELRD--------EGL 188
                Q ++ E I    + +AP     V L  +++    P   + E R         +  
Sbjct: 208 FQP--QGDVVEVI---GNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKE 262

Query: 189 TREDLTALPFVTIDSGSTQDMDDALYVKDNG-----DGTLQMTVAIADPTAYVSEGSELD 243
            R DL  LPFVTID    +D DDA+Y +  G      G  ++ VAIAD ++YV  GS LD
Sbjct: 263 KRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALD 322

Query: 244 NIAKKRAFTNYLPGFNIPMLPRELSDDICSLWPDVSRPVLACSVTVGADGSLGSDIRFFA 303
             A++R  + Y P   +PMLP ELS+ +CSL P V R  + C +T+   G +  D +F+ 
Sbjct: 323 VEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQM-VDYQFYE 381

Query: 304 ATIESKAKLAYDDVSDWLEADEKSEWQPASEVIASQIRLLKRVCDVR----SAWRTEHAL 359
             I S A+L Y+ VS  LE     E +   E     +  LK + ++      A  T  A+
Sbjct: 382 GVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAI 441

Query: 360 VFKDRPDYRFVLGEKGNVLEIIAEHRRIANRIVEESMIAANVCAAIALRDSLGFGVYNVH 419
            F+ + + R + GE+  + EI    R  A++++EE M+AANV  A  L+      +Y VH
Sbjct: 442 DFETQ-ETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVH 500

Query: 420 TGFDPLLVENAVTVLQANDVEANAEELLTLPGFCALRRKLDALPT-QFLDSRIRRFQTFA 478
            G  P  +E     L    +  +  +  +   + AL   +   P    + + + R  + A
Sbjct: 501 DGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQA 560

Query: 479 EISTTPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLK----------------AMILQQS 522
             ST    HFGL  EAY  +TSPIR+Y D++ HR ++                AM + ++
Sbjct: 561 VYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIPKA 620

Query: 523 AEKPQDDMTI-QLAER-----RRANRMAERDVGDWLYARYLEDKVGTDVKFSAEIIDVTR 576
              P D+ T+ QL E+     RRA+  A RDV +WL   +++D+VG    F   I  VT 
Sbjct: 621 RIYPYDENTLEQLGEQCSMTERRADE-ATRDVVNWLKCEFMKDRVGE--TFPGVITAVTG 677

Query: 577 GGLRIRLQDIGA-----VAFIPAPFLH-SVRDELVCSADTGTVLIKGEVAYRQSDIIEVN 630
            GL + L DI       V+ +P  + H       +    TG        ++R  D IEV 
Sbjct: 678 FGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGR-------SFRLGDTIEVK 730

Query: 631 IAEVRMENRNV 641
           +  V ++ R +
Sbjct: 731 VMRVDLDERKI 741