Pairwise Alignments

Query, 323 a.a., ribose ABC transporter permease from Rahnella sp. WP5

Subject, 342 a.a., Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components from Enterobacter asburiae PDN3

 Score =  253 bits (646), Expect = 5e-72
 Identities = 140/307 (45%), Positives = 202/307 (65%), Gaps = 16/307 (5%)

Query: 24  LIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLAL 83
           LI +++L+    S + NFF+  N+FNIL + S+  IMAVGMT VILT+GIDLSVGS+LA+
Sbjct: 30  LIFMILLLIFFQSQNSNFFSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAV 89

Query: 84  TGAVAASIVG------LEVNAF------VAVCAALALGAAVGGVTGMIVAKGKVQAFIAT 131
               AA ++       ++ NA+      + +   LA+G A+G + G+ V + ++  FI T
Sbjct: 90  CAMTAAYVIKGDNFTTVDPNAWGGMSWLIGLGICLAMGTAIGFLHGLGVTRLRLPPFIVT 149

Query: 132 LVMMLLLRGITMVYTNGSPISTGFNDVADVFGWFGIGRPLGIPTPVWLMAVVFIAAWYML 191
           L  M + RG+T+V  +G+PI+ GF+     + W+G G  LGI  P+W+ A+V +  +  L
Sbjct: 150 LGGMTIWRGLTLVINDGAPIA-GFDPG---YRWWGRGELLGISIPIWIFAIVAVGGYLAL 205

Query: 192 HHTRLGRYIYALGGNESATRLSGISVDKVKIIVYSLCGLLAALASIIEVARLSSAQPNAG 251
           H TR GR++YA+GGN  A RL+G++V +V + VY L G LA LA  I  ARL SA+  AG
Sbjct: 206 HKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAG 265

Query: 252 TGYELDAIAAVVLGGTSLSGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVI 311
             +EL  IA+VV+GGTSL GG GRI GT+IG++I+G L NGL L+ VS+YYQ I+  ++I
Sbjct: 266 ISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLII 325

Query: 312 LLAVLVD 318
           +LAV  D
Sbjct: 326 VLAVAFD 332