Pairwise Alignments

Query, 847 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 870 a.a., Outer membrane usher protein SfmD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  597 bits (1540), Expect = e-175
 Identities = 340/863 (39%), Positives = 507/863 (58%), Gaps = 60/863 (6%)

Query: 31  LASTALGLLAAH---PARSENVYFDPQFIERQAGDVGDIDLSLFQSNDQAQLPGNYDTAL 87
           L+S AL +LAA     +R E+ YF+P F+      V D  LS F+  +  Q PG Y   +
Sbjct: 18  LSSVALSVLAALCPLTSRGES-YFNPAFLSADTASVAD--LSRFEKGNH-QPPGIYRVDI 73

Query: 88  YVNKKLKIRHSISYLSKPDGT------LEPQITPDILRLLGVNVDAFPALKNHQPDAPLG 141
           + N +      I + +   GT      L P  TP+ ++ LGVN  AFP + +   D    
Sbjct: 74  WRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFP-VSDKGVDTTCI 132

Query: 142 SLAQYIPAADVKFDFYLMQLNFSIPQAAILQKAEDYIDPEKWDDGAPVLFSNYSYSGGQR 201
            L + IP A+V FDF  M+LN S+PQA++L  A  YI PE+WD+G P    NYS++G + 
Sbjct: 133 HLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSR- 191

Query: 202 SYRNGSDDSSQYLNLQNGFNIGPWRLRNYTTYSNS-GD---EKRWDTISTYAERDIKTLK 257
               G+D  S +L+L +G N GPWRLRN   ++ S GD    +RW+ I T+ +R I  LK
Sbjct: 192 ----GTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLK 247

Query: 258 SKFQIGENSTSGEILSSVPFSGVQLFSDDNMLPNSQRGFAPTIRGIANSNAEVTIRQNDH 317
           S+  +G+++T  ++  SV F G +L+S DNM P+S +G+APT+RGIA + A++TIRQN +
Sbjct: 248 SELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGY 307

Query: 318 IIYQSFVPPGAFEINDLYPSSYSGNLEITVKEADGTERRFNQPFSAIPIMQRPGRLKYSA 377
           +IYQS+V PGAF I DL P+S SG+LE+TV E DG+++R+  P+S +P++QR GR+KY  
Sbjct: 308 VIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDL 367

Query: 378 TAGTYRATDNNEKEPTFAQGTAIYGISNTITSYGGSVVSEDYLSGLIGIGYNLRWLGGIS 437
            AG +R+ ++ +  P F QGT I G+   +T+YGG+ +++ Y + ++G G NL   G +S
Sbjct: 368 VAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVS 427

Query: 438 ADVTHARSTLDNNQTTSGQSYRVQYSKNIEMTDTDFSLASYRYSSAGYYDFD-------E 490
            DVTHARS L ++ T  GQS R  Y+K++    T+F L  YRYS+ G+Y  D       E
Sbjct: 428 VDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSME 487

Query: 491 STQY-LDGD----NVP------ELDYHKRSKIQFNINQTLWQGASLYLSGYKQDYWNNSG 539
              Y  D D     VP       L Y K+ + Q NI+Q L    SLYLSG +Q+YWN + 
Sbjct: 488 GYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTAD 547

Query: 540 KEKNLSLGLNNSLFGISYNLSYSYSQ-LQDQDNDQQISLNVRIPLS----------RWLP 588
                 LG  +   GISY+LS+S+S+ +     D+ ++ N+ +P S            L 
Sbjct: 548 TNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILD 607

Query: 589 QSWGTYNVSHQKGEGTRHQVGLSGTALDDRRLSYSVQQSYTDHNSESGSNLYSSYRSSFG 648
           +++ T+N +  +      Q G+ GT L+ R LSYSV Q  +  N  SGS   +S+++++G
Sbjct: 608 RTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGS-ASASWQATYG 666

Query: 649 NLNAGYNYSRDSQQLSYGIAGGIVAHSRGATLSQPLGDSFALIDTNGASGARLQNLPGVR 708
            L  GYNY RD    ++ ++GG+V H+ G T SQPLGD+  LI   GA G R++N  GV+
Sbjct: 667 TLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVK 726

Query: 709 TDWRGFAVVPYLTAYNENRIAMDTTTLPDDVDIENTSAIVIPNSGAMVTAHFDARVGARV 768
           TDWRG+AV+PY T Y  NR+A+DT T+ +  D+EN  + V+P  GA+V A FD R+G R 
Sbjct: 727 TDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRA 786

Query: 769 LVTLVRPNGATVPFGAVAATDKQ--SNIVDEGGVVYLSGIPLEKPVLLHVKWGNNASQQC 826
           ++T  R  G  +PFGA+        +++V + G +YLSG+PL+    L ++WG   + +C
Sbjct: 787 IIT-ARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGE--LFIQWGEGKNARC 843

Query: 827 QAQLNISAST--SQVNSLTAQCI 847
            A   ++  +    +   +A CI
Sbjct: 844 IAPYALAEDSLKQAITIASATCI 866