Pairwise Alignments

Query, 847 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 873 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  638 bits (1646), Expect = 0.0
 Identities = 370/894 (41%), Positives = 526/894 (58%), Gaps = 71/894 (7%)

Query: 2   LTDEKFLQKSLSGDIKKTSAPLVLKLGGLLASTALGLLAAHPARSENVYFDPQFIERQAG 61
           + ++ F+ +  S   K    PL L +           LA  P  +EN YF+P F+     
Sbjct: 1   MRNQLFMTRYYSSVTKPVLTPLALAIA----------LAPAPGWAEN-YFNPAFLSDDPS 49

Query: 62  DVGDIDLSLFQSNDQAQLPGNYDTALYVNKKLKIRHSISYLS---------KPDGTLEPQ 112
            V D  LS F  N  AQ  G Y   +Y+N        I++ +           D  L   
Sbjct: 50  AVAD--LSTFSRN--AQAAGMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRAC 105

Query: 113 ITPDILRLLGVNVDAFPALKNHQPDAPLGS---LAQYIPAADVKFDFYLMQLNFSIPQAA 169
           +TP++L+ +GVN  AFP L      A  GS   LA  IPAA  +FDF   +L+ SIPQAA
Sbjct: 106 LTPEMLKNMGVNTGAFPLLAK----AAAGSCPDLASAIPAARTRFDFAQQRLDISIPQAA 161

Query: 170 ILQKAEDYIDPEKWDDGAPVLFSNYSYSGGQRSYRN--GSDDSSQYLNLQNGFNIGPWRL 227
           ++  A  YI P+ WD+G   L  NY+++G     R+  GS ++S +L L +G N+G WRL
Sbjct: 162 MVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRL 221

Query: 228 RNYTTYS-NSGDEKR---WDTISTYAERDIKTLKSKFQIGENSTSGEILSSVPFSGVQLF 283
           R+Y+T++ NSGD+     W  ISTY ERD+  L+ +   G++ T   +  S+PF G+QL 
Sbjct: 222 RDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLA 281

Query: 284 SDDNMLPNSQRGFAPTIRGIANSNAEVTIRQNDHIIYQSFVPPGAFEINDLYPSSYSGNL 343
           SDDNMLP+S +GFAPTI GIA SNA+VTIRQN +II Q +VPPGAF INDLYP++ SG+L
Sbjct: 282 SDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDL 341

Query: 344 EITVKEADGTERRFNQPFSAIPIMQRPGRLKYSATAGTYRATDNNEKEPTFAQGTAIYGI 403
            + VKE+DG+  R+N P+SA+PI+QR GRLKY+AT   YR+  + +++  F+Q T I+G+
Sbjct: 342 TVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFSQATLIWGL 401

Query: 404 SNTITSYGGSVVSEDYLSGLIGIGYNLRWLGGISADVTHARSTLDNNQTTSGQSYRVQYS 463
            +  T YGG+ +S  Y +  IG G NL   G +S DVT A STL +N T  GQS R  Y+
Sbjct: 402 PHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYA 461

Query: 464 KNIEMTDTDFSLASYRYSSAGYYDFDEST----QYLDGDNVPELD-------------YH 506
           K++  + T+  L  YRYS++G+Y  D++T       D D+  + D             Y 
Sbjct: 462 KSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYT 521

Query: 507 KRSKIQFNINQTLWQGASLYLSGYKQDYWNNSGKEKNLSLGLNNSLFGISYNLSYSYSQ- 565
           +R K+Q +INQ L    SL+++G +Q YW+   K+  L +G +++L GI++++SY+ ++ 
Sbjct: 522 RRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKS 581

Query: 566 LQDQDNDQQISLNVRIPLSRWLPQS---------WGTYNVSHQKGEGTRHQVGLSGTALD 616
             D + DQ  +LN+ +PLS+WL            + T++ S  K        GLSGT LD
Sbjct: 582 AGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTDKQHNVTQNAGLSGTLLD 641

Query: 617 DRRLSYSVQQSYTDHNSESGSNLYSSYRSSFGNLNAGYNYS--RDSQQLSYGIAGGIVAH 674
           +  LSY++QQ Y +H           Y  + GN N GYN S   D QQ++YG++GG+VAH
Sbjct: 642 ENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAH 701

Query: 675 SRGATLSQPLGDSFALIDTNGASGARLQNLPGVRTDWRGFAVVPYLTAYNENRIAMDTTT 734
           + G TLSQPLG++  LI   GA+   + + PG+ TD RG+AVVPY T Y +NR+A+D   
Sbjct: 702 AHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNA 761

Query: 735 LPDDVDIENTSAIVIPNSGAMVTAHFDARVGARVLVTLVRPNGATVPFGA-VAATDKQSN 793
           + DDVDI++    V+P  GA+V A F ARVGAR LVTL   NG  VPFGA V   D+ + 
Sbjct: 762 MADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTL-NHNGKPVPFGATVTVNDRHAE 820

Query: 794 -IVDEGGVVYLSGIPLEKPVLLHVKWGNNASQQCQAQLNISASTSQVNSLTAQC 846
            IVDE G VYLSG+  +   +LHV+WGN   QQC A  ++S+S   ++   A+C
Sbjct: 821 AIVDEAGEVYLSGLSAQG--VLHVRWGNLPDQQCVASYHLSSSRQILSRQHAEC 872