Pairwise Alignments

Query, 847 a.a., fimbrial biogenesis outer membrane usher protein from Rahnella sp. WP5

Subject, 809 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  581 bits (1498), Expect = e-170
 Identities = 315/821 (38%), Positives = 496/821 (60%), Gaps = 43/821 (5%)

Query: 56  IERQAGDVGDIDLSLFQSNDQAQLPGNYDTALYVNKKLKIRHSISYLSKPDG----TLEP 111
           +E     V ++DLS+F+   QA+  G Y+  +Y+N       +I++ +K       +L+P
Sbjct: 1   LENDEPGVENVDLSVFEKGGQAE--GTYNVDIYINNTSVETKNIAFKNKKSADNKLSLQP 58

Query: 112 QITPDILRLLGVNVDAFPALKNHQPDAPLGSLAQYIPAADVKFDFYLMQLNFSIPQAAIL 171
            ++ + L+  GV  + FP LKN        SL   +  A  KF+    +L+ +IPQ A++
Sbjct: 59  CLSVEQLKQWGVKTENFPELKNDPNGCTDLSL---LAGAVAKFNVIGNRLDLAIPQIALI 115

Query: 172 QKAEDYIDPEKWDDGAPVLFSNYSYSGGQ-RSYRNGSDDSSQYLNLQNGFNIGPWRLRNY 230
               +++   +WD+G      NYS++G Q         ++S+Y NL+ G NIG WR RNY
Sbjct: 116 ADPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNY 175

Query: 231 TTYSNSGD-EKRWDTISTYAERDIKTLKSKFQIGENSTSGEILSSVPFSGVQLFSDDNML 289
           +T+++  D +  WD+  TY  RDI+ LK +   GEN+T  ++  S+ F GVQ+ SDD+ML
Sbjct: 176 STWNHDSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDML 235

Query: 290 PNSQRGFAPTIRGIANSNAEVTIRQNDHIIYQSFVPPGAFEINDLYPSSYSGNLEITVKE 349
           P+S +GFAP IRG+A S+A+VT+ QN + IY++ VP G F INDLYP+  SG+L +T+KE
Sbjct: 236 PDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKE 295

Query: 350 ADGTERRFNQPFSAIPIMQRPGRLKYSATAGTYRATDNNEKEPTFAQGTAIYGISNTITS 409
           +DG+E+ F  P++++P++QR G LKY  T G  R++D +  +  FA+ TA+YG++  IT+
Sbjct: 296 SDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITA 355

Query: 410 YGG--SVVSED-YLSGLIGIGYNLRWLGGISADVTHARSTLDN----NQTTSGQSYRVQY 462
           YGG  S +S D Y + LIG G NL  LG +S DVT++ S +      + T +GQS+R++Y
Sbjct: 356 YGGIESTLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRY 415

Query: 463 SKNIEMTDTDFSLASYRYSSAGYYDFDESTQ-YLDGDNVPELDYHKRSKIQFNINQTLWQ 521
           SK+I+ T T+F++A YRYS+  YY  ++    Y D  +      H R++   +++Q +  
Sbjct: 416 SKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYD----HVRNRTDLSLSQDIIY 471

Query: 522 GASLYLSGYKQDYWNNSGKEKNLSLGLNNSLFGISYNLSYSY------SQLQDQD----N 571
           G S+ L+ Y +DYWN++    +L +G NN+   +SY ++YSY      SQ +D D    N
Sbjct: 472 G-SISLTLYNEDYWNDT-HTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSN 529

Query: 572 DQQISLNVRIPLSRWLPQSWGTYNVSHQKGEGTRHQVGLSGTALDDRRLSYSVQQSYTDH 631
           DQQIS+N+ IPL  ++P ++ TYN++  K   T H VGL+GTAL  + LS+SVQ+ Y+  
Sbjct: 530 DQQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQ 589

Query: 632 NSESGSNLYSSYRSSFGNLNAGYNYSRDSQQLSYGIAGGIVAHSRGATLSQPLGDSFALI 691
              +  N+ ++Y  ++ ++N GY+Y    ++L+YG+  G++ H  G TLSQP+ D+  L+
Sbjct: 590 EKATSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTIILV 649

Query: 692 DTNGASGARLQNLPGVRTDWRGFAVVPYLTAYNENRIAMDTTTLPDDVDIENTSAIVIPN 751
              GA+G  + N  GV TD+RG+AVVPY + Y+ N +++DTT +  ++++ +TS  ++P 
Sbjct: 650 KAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPT 709

Query: 752 SGAMVTAHFDARVGARVLVTLVRPNGATVPFGAVAAT----DKQSNIVDEGGVVYLSGIP 807
            GA+V A +   +G + L+ L R N   VPFGA  ++    D  S+ V + G  +L+G  
Sbjct: 710 RGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTG-- 767

Query: 808 LEKPVLLHVKWGNNASQQCQAQLNI--SASTSQVNSLTAQC 846
           LEK   L VKWG  A+ QCQ    I  S S S V  L  QC
Sbjct: 768 LEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQC 808