Pairwise Alignments

Query, 364 a.a., LPS export ABC transporter permease LptF from Rahnella sp. WP5

Subject, 366 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  559 bits (1440), Expect = e-164
 Identities = 274/358 (76%), Positives = 314/358 (87%)

Query: 1   MIIIRYLVRETFKSQFAILFILLLIFFCQKLVRVLGAAVDGDIPTNLVLSLLGLGVPEMA 60
           MIIIRYLVRET KSQ AILFILLLIFFCQKLVR+LGAAVDGDIP NLVLSLLGLGVPEMA
Sbjct: 1   MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA 60

Query: 61  QLILPLSLFLGLLMTLGKLYTDSEITVMHACGLGKRSLVIAALVLALFTSVFAGVNAIWL 120
           QLILPLSLFLGLLMTLGKLYT+SEITVMHACGL K  LV AA++LA+FT++ A VN +W 
Sbjct: 61  QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120

Query: 121 SPWSSKHQDEVLAEAKANPSMAAMVEGQFQQAQNGNAVLFVGSVKGKEFHNVFLAQLRPN 180
            PWSS+HQDEVLAEAKANP MAA+ +GQFQQA NG++VLF+ SV G +F +VFLAQ+RP 
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180

Query: 181 GNQRPSVVVADKGHMLQRADGSQQVMLDKGTRYEGTALLRDFRVTDFTDYLAVIGHQAVQ 240
           GN RPSVVVAD GH+ Q  DGSQ V L++GTR+EGTALLRDFR+TDF DY A+IGHQAV 
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVA 240

Query: 241 LDPNQSDQMTMTQLWNSNEPEARAELNWRLTLIVSVFIMALLVVPLSVVNPRQGRVLSML 300
           LDPN +DQM M  LWN++   ARAELNWR+TL+ +VF+MAL+VVPLSVVNPRQGRVLSML
Sbjct: 241 LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 301 PAILLYLIFFLLQTSLRSNGAKGKLDPMLWMWGTNLLYFALALVLNAWDTLPVRKIRA 358
           PA+LLYL+FFL+QTSL+SNG KGKLDP LWMW  NL+Y ALA+VLN WDT+PVR++RA
Sbjct: 301 PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRA 358