Pairwise Alignments

Query, 275 a.a., 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA from Rahnella sp. WP5

Subject, 270 a.a., ribosomal RNA small subunit methyltransferase A from Pseudomonas simiae WCS417

 Score =  241 bits (615), Expect = 1e-68
 Identities = 125/263 (47%), Positives = 170/263 (64%), Gaps = 1/263 (0%)

Query: 6   HQGHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLAALTEPVASRLDSMTVI 65
           H  H ARKRFGQNFL D  VID I+ +IH  P + ++EIGPG  ALT+ + +    + V+
Sbjct: 4   HYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVV 63

Query: 66  ELDRDLATRLENNPKFQGKLRVIQSDAMKINFGELSEELGQPLRVFGNLPYNISTPLMFH 125
           ELD+DL   L      +    + Q DA+K +F  L+      LRV GNLPYNISTPL+FH
Sbjct: 64  ELDKDLIPILNQQFADKPNFNLHQGDALKFDFNTLNAAPNS-LRVVGNLPYNISTPLIFH 122

Query: 126 LFTYTNAIKDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPESFTPAP 185
           L      I+DMHFMLQKEVV RL AGP    +GRL++M QY+C V  +  V P +F P P
Sbjct: 123 LLNNAGIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPP 182

Query: 186 KVESAVVRLVPHEVIPYPVPDIRILSRLTTDAFNQRRKTVRNSLGHLFTPEQMTELGLDL 245
           KV+SA+VRLVPH V+P+P  D ++L R+  +AFNQRRKT+RN+L  L +  ++   G+D 
Sbjct: 183 KVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAAGVDG 242

Query: 246 SMRAENISVEQFCKLANWLSTRP 268
            +R E + +  F +LA+ L+ +P
Sbjct: 243 GLRPEQLDLAAFVRLADQLAIQP 265