Pairwise Alignments

Query, 780 a.a., DNA polymerase II from Rahnella sp. WP5

Subject, 783 a.a., DNA polymerase II (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 550/780 (70%), Positives = 644/780 (82%), Gaps = 3/780 (0%)

Query: 1   MLTRHWRDTPRGTEVELWLATDEGPQKVRLPLQESVAFIPAEQRAAAERILIDEKNISLR 60
           +LTRHWRDTP+GTEV  WLATD GP +  L  QESVAFIP  Q + A  +L  EK+  L 
Sbjct: 7   ILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAFIPTSQTSRAASLLQAEKDYRLT 66

Query: 61  PLPLQDFHSRAVLGLYCPQHRQLMRIEKLLKENGVSVFEADIRPPERFLMERYITAPVWF 120
           PL L+DFH + V GLYC  HRQLMR+EKLL+ENGV+V+EAD+RPPER+LMER+IT+PVW 
Sbjct: 67  PLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVTVYEADVRPPERYLMERFITSPVWV 126

Query: 121 SGKPGPDKLLMDTKMKPAEDYRPPLKLCSLDIETSGNGELYCIGLEGCGQRHVYMLGPPN 180
            G+   + ++ + ++KP  DYRPPLK  SLDIET+ +GELYCIGLEGCGQR VYMLGP N
Sbjct: 127 DGEMR-NGVIRNARLKPHSDYRPPLKWVSLDIETTRHGELYCIGLEGCGQRTVYMLGPAN 185

Query: 181 GDPNAQFDFNMVYVDSRPQLLEKLNEWLEIYDPDAIIGWSVVQFDLRVLQKHADRYKIPL 240
           GD + Q DF +VYV SRPQLLEKLN W   +DPD IIGW+VVQFDLR+LQKHA+RY+IPL
Sbjct: 186 GDDH-QLDFELVYVASRPQLLEKLNAWFAEHDPDVIIGWNVVQFDLRMLQKHAERYRIPL 244

Query: 241 KFGRGGGELEWREHGFKQGHFFAAAAGRLIIDGIEALKSAFWNFNSFSLEFVSQSLLGEG 300
           + GR   ELEWREHGFK G FFA A GR+IIDGI+ALKSAFWNF+SFSLE VSQ LLGEG
Sbjct: 245 RLGRDNSELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAVSQELLGEG 304

Query: 301 KASDNPYQRLAEIEQRFREDKPALARYNLKDCELVTRIFAKTELMPFLLERASVTGLAVD 360
           K+ DNP+ R+ EI++RF +DKPALA YNLKDCELVTRIF KTE+MPFLLERA++ GL VD
Sbjct: 305 KSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMPFLLERATINGLPVD 364

Query: 361 RSGGSVAAFTHLYLPRMHRAGYVAPNMGELQGEMSPGGFVMDSRPGLYDSVLVLDYKSLY 420
           R GGSVAAF HLY PRMHRAGYVAPN+GE+    SPGG+VMDS+PGLYDSVLVLDYKSLY
Sbjct: 365 RHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPLASPGGYVMDSQPGLYDSVLVLDYKSLY 424

Query: 421 PSIIRTFLIDPVGLVAGLQQPDDEHSVPGYRNARFSRETHCLPEIVRQIWMGREEAKKQK 480
           PSIIRTFLIDPVGLV G+ QPD EHS  G+ +A FSRE HCLPEIV QIW GR+EAK+Q 
Sbjct: 425 PSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQG 484

Query: 481 NKPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHDIMRQTRELIEAEGYQVIYG 540
           NKPLSQALKIIMNAFYGVLG++ CRFFDPRLASSIT+RGH IMRQT+ LIEA+GY VIYG
Sbjct: 485 NKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYG 544

Query: 541 DTDSTFVWLNKAHSQEDADVIGRHLVERVNVWWKAHLQQEYGLESALELEFETHYQRFLM 600
           DTDSTFVWL +AHS+ DA  IG  LV  VN WW   LQQ+  L SALELEFETH+ RFLM
Sbjct: 545 DTDSTFVWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQ-NLTSALELEFETHFCRFLM 603

Query: 601 PTIRGSETGSKKRYAGLVNDADGEHIVYKGLETVRTDWTKLAQEFQQELYQRIFHRQPYQ 660
           PTIRG++TGSKKRYAGL+ + D + +V+KGLETVRTDWT LAQ FQQELY R+F  +PYQ
Sbjct: 604 PTIRGADTGSKKRYAGLIQEGDSQRMVFKGLETVRTDWTPLAQRFQQELYLRVFRNEPYQ 663

Query: 661 DYVREYVARTLSGEFDDKLVYRKRLRRKLSDYEKNVPPHVRAARLADDYNALHGRAKQYQ 720
           DYVRE + + ++GE D +LVYRKRLRR L +Y++NVPPHVRAARLAD+ N   GR  QYQ
Sbjct: 664 DYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNVPPHVRAARLADEQNLKQGRPAQYQ 723

Query: 721 NGGWISYVMTTSGPEPLENRQSPVDYDHYIERQLEPVADGILPFLHDDFATLITGQMGLF 780
           N G I YV T +GPEP++ +QSP+DY+HY+ RQL+PVA+GILPF+ D+FATL+TGQ+GLF
Sbjct: 724 NRGAIKYVWTVNGPEPVDYQQSPLDYEHYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF 783