Pairwise Alignments

Query, 368 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 372 a.a., Inner membrane transport permease YhhJ from Pseudomonas sp. RS175

 Score =  150 bits (379), Expect = 5e-41
 Identities = 104/370 (28%), Positives = 181/370 (48%), Gaps = 11/370 (2%)

Query: 5   LWTLIRKELQSLLREPQTRTILILPVVLQVILFPFAATLEVTNATIAIYNQDNGSHSVEL 64
           +W L  KEL SL  +      L+    + + +    + + V NA++A+ ++D    S +L
Sbjct: 7   IWRLGLKELTSLRYDSVLLLFLVYAFTVAIYMPAAGSVIGVHNASVAVVDEDQSHLSRQL 66

Query: 65  TQRFAHAKAFSHLLLLKSPQEIQPTLDKQKALLLIRFPADFSRNLASNQPAKLQIILDGR 124
            Q     +  + + L     E+   +D  +   +I  PA+F  +L + +   LQ+ +D  
Sbjct: 67  AQALQPPEFQTPVALPYG--ELDKVMDSGRYTFVIDVPANFQTDLLAGREPALQLNVDAT 124

Query: 125 NSNSAQIAANYLQQIVKNYQLELMTGQPKSNNSE-----LVIRNWYNPNLNYKWFVVPSL 179
             + A + A Y+ +I   +Q ELM+   ++  +E     L  R+ +NPNL   WF+    
Sbjct: 125 AMSQAFMGAGYIGRI---FQQELMSYSGQAQAAERTPVKLATRSLFNPNLEGGWFLAVIQ 181

Query: 180 IAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFVGKAVPAQIVAIAQATIVLG 239
           I    TI  +I+T  ++ RERE GTLD LLV PL   +I + K     +V +    I L 
Sbjct: 182 IVNNITILAIILTGTALLREREHGTLDHLLVLPLTALEIMLAKICSNMLVVVLCTWISLE 241

Query: 240 VGI-WGYQIPFSGSVLLFYFTMLIYGLSLVGFGLLISALSSTQQQAFIGVFVFMMPAILL 298
           V + +   +P +GS+ LF     +Y  +    G+ ++ L+ +  Q  +     ++P +LL
Sbjct: 242 VVVKFALGVPLAGSLPLFLAVTALYLFASTALGIFLATLARSTPQFGLLSIPVIIPMLLL 301

Query: 299 SGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWGSLWPLLVIAAITGSA 358
           SG  +P+++MP WLQ +   +P  HF  +   I  +DA +D+VW  L  L  I  +  + 
Sbjct: 302 SGGSTPLDSMPQWLQWVMQGSPSTHFVSLGAAILFRDAGVDVVWPDLLALAAIGLLFFAI 361

Query: 359 AYWMFRRKVA 368
           A   FR+ +A
Sbjct: 362 ALGRFRKSLA 371