Pairwise Alignments

Query, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

Subject, 188 a.a., RNA polymerase sigma factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 79.0 bits (193), Expect = 5e-20
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 20  ATSDEMLLASIANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRTAR 79
           A   +  LA+ A GDR A+  LY      +    LR+VRD ATAED++   F+++W  A 
Sbjct: 8   AFDHDAALAACARGDRAALRRLYEHEGRYLLGVALRIVRDRATAEDVLHDAFMNIWTRAD 67

Query: 80  QFEGRAQVST-WLLSIARFKALTALR---QRQHEDIDQDDVLEIADGSDSPETALDRSRT 135
            F+ R      W+  I R +AL A+R   +    D DQ D L+  D   +P+ A   +  
Sbjct: 68  TFDARRGAGRGWMYGIVRHRALDAVRAGARTVSADEDQLDALQAVDPPAAPDMAEAFALR 127

Query: 136 SDI--LRACIAKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQLAEL 192
           +D+  L  C+A+L    R  +   Y    +  E+   +G P  +VK    + R+ LA L
Sbjct: 128 ADLGRLDDCLARLDTPKRNCVLYAYLDGCTHGEIAERLGAPLGSVKA---WIRRGLASL 183