Pairwise Alignments

Query, 454 a.a., proton-conducting transporter membrane subunit from Rhodopseudomonas palustris CGA009

Subject, 485 a.a., NADH:ubiquinone oxidoreductase, membrane subunit N from Escherichia coli BL21

 Score =  243 bits (620), Expect = 1e-68
 Identities = 173/485 (35%), Positives = 258/485 (53%), Gaps = 38/485 (7%)

Query: 1   MTAAQFAALSPLVVLAIAAVAAMMLVPLARLQIVQASAAAGLAIAAALVLLRIGAPAAPM 60
           +T     AL PL+++ +  V  M+ +   R   + A+ +  + + AALV L     A  M
Sbjct: 3   ITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSV-IGLNAALVSLWFVGQAGAM 61

Query: 61  GA--LFTDDGPARFGIVFACLVSLGALVFLRTGHPAKEAPS--------LLVLVAIGAAT 110
               L   DG   F +++  LV L +L      +P  E  +        L+++ A+G   
Sbjct: 62  DVTPLMRVDG---FAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGIL 118

Query: 111 LAGAGHAATLFLGIEILSLSLIAL--FAFRLTRQGLEAAYKFLVMSGLASSALLLGIALI 168
           LA A H A+LFLGIE++SL L  L  +AFR  R  LEA+ K+ ++S  ASS LL G+AL+
Sbjct: 119 LANANHLASLFLGIELISLPLFGLVGYAFRQKRS-LEASIKYTILSAAASSFLLFGMALV 177

Query: 169 FAETGALDFAGWG---GRGALTA----FGTALLLAGLAFKFSLVPFHMWTPDAFEAAPAS 221
           +A++G L F   G   G G L       G  L++ GL FK SLVPFH+WTPD ++ APA 
Sbjct: 178 YAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAP 237

Query: 222 AATLAGVVSKSAVAIVILRLALTAHLPEPVWSQG-LAALGGASVLIGNLLALRQPQLPRM 280
            +T     SK A+  V++RL L A + +    +  LA +  AS++ GNL+AL Q  + R+
Sbjct: 238 VSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRL 297

Query: 281 LGYSTIAHSGY--IALIIASGTPHAGEAVLFYLAIYAPAMLGALCVSAALGRAPTLPDL- 337
           LGYS+I+H GY  +ALI       + EAV  YLA Y  + LGA  V + +      PD  
Sbjct: 298 LGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDAD 357

Query: 338 -----HGLMKRRPLEAIALSLSLLSLAGLPAAGGFIAKLFLLRVLIDGSLWVLVGIVVAG 392
                 GL   RP+ A  +++ +LSLAG+P   GFI K ++L V +   LW LVG VV G
Sbjct: 358 SLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVG 417

Query: 393 SSLGFFYYAKFFTAPFVGHTHDESEPLP---QLDRGLLIVCIA--LIVIFGVAPAGLMNV 447
           S++G +YY +   + ++          P   Q   G ++V I+  L+++ GV P  L+++
Sbjct: 418 SAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISI 477

Query: 448 VAATM 452
           V   M
Sbjct: 478 VRLAM 482