Pairwise Alignments

Query, 386 a.a., CmpA/NrtA family ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 408 a.a., Nitrate-binding regulatory protein (nasS) (from data) from Pseudomonas simiae WCS417

 Score =  159 bits (402), Expect = 1e-43
 Identities = 123/379 (32%), Positives = 172/379 (45%), Gaps = 22/379 (5%)

Query: 5   LRIGFIPLVDAAALIVAADKGFCAAEGLDVELVREISWANVRDKFNIGLFDAAHLLAPLA 64
           L +GF+ L D A+++VAA +GF    GL + L R+ SWAN+RDK   G  DAAH L  L 
Sbjct: 28  LDLGFMALSDCASMVVAATQGFAQPYGLTLNLKRQTSWANLRDKLVSGELDAAHSLYGLI 87

Query: 65  VASSLGIGHVKVPVISGF-GLGVNGNAITVSPDLHAAIVAMADGDVADPLVSGRALARVV 123
            A  LGIG V    ++   GL  NG +I +S  L    V           ++  AL R V
Sbjct: 88  YAVHLGIGGVAPTDMAVLMGLNQNGQSINLSRGLQQQGV-----------ITPEALDRHV 136

Query: 124 AERRAKGQEPLTFGMTFPFSSHNYDLRFWMGAGGVDPDEDVRLVVLPPPFMVESLASKHL 183
            + R K    LTF  TFP  +H   L +W+ + G+ P +DV  VV+PPP MV  L +  +
Sbjct: 137 HQSRTK----LTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRI 192

Query: 184 DGFCVGAPWNSVAIDLGIGTILHFTSELFQRAAEKMLTVRANWAAQHPEVLKALIRAHAR 243
           DGFCVG PW + A+    G  L  T  ++    EK+L     +  Q+P   + L+ A   
Sbjct: 193 DGFCVGEPWCASAVKQNQGFTLATTQAIWPDHPEKVLGCTQAFVDQYPNTARVLVMAILE 252

Query: 244 AADYIEDVA-NRDEVCALLTAPGRIEVAPELIRRTLDGRLKVAADGTLRTSDRYLLVGRG 302
           A+ +IE+ + NR     LL+    ++   + I   L G          +          G
Sbjct: 253 ASRFIEESSENRRSTAQLLSGREYLDAPLDCIEPRLLGTYDDGLGNHWQDPHALRFFADG 312

Query: 303 AAARPDPVQGAWNYAQMVRWGQAPLSADLLAAAKAVFRPDLY---DAAVGTAPALPSAPA 359
               P    G W   Q  RWG      D L  A+ V +  LY    AA+G A   P   +
Sbjct: 313 EVNLPYLSDGMWFMTQFRRWGLLREDPDYLGVARQVQQLPLYRQAAAALGIATKHPDMRS 372

Query: 360 DGIGECTGAPFDPDDIAGY 378
             +    G  +D  D A Y
Sbjct: 373 SQL--IDGKVWDGSDPADY 389