Pairwise Alignments

Query, 319 a.a., IS110 family transposase from Rhodopseudomonas palustris CGA009

Subject, 329 a.a., Transposase and inactivated derivatives from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  105 bits (263), Expect = 1e-27
 Identities = 98/319 (30%), Positives = 153/319 (47%), Gaps = 17/319 (5%)

Query: 6   PLAVAAGVDAGQRFLDV--ALAPSGQT-FRMPNLAEGIAEIIARLERSGVRRVVLEAIGP 62
           P  V  GVD  +   D+   L    +T  ++ N +EG +E++  L       VV+EA GP
Sbjct: 4   PEKVYIGVDISKVKFDIYFKLGNGEETKVKLDNNSEGFSELLNLLPSDSW--VVMEASGP 61

Query: 63  YAEPLVKALSVAGFEVGIVNPRRIKAFREAEGSRAKTDRLDARLIARFA-LTMPETLRPL 121
           Y   L   L   G  V ++NP  IK F + + SR KTD  DA+ IA +  L       PL
Sbjct: 62  YYYQLASFLYDKGVMVSVINPLVIKRFTQMKLSRTKTDSADAKSIAEYGNLLKINPWEPL 121

Query: 122 PTDTQLELKALSLRRRQLTE-----MIAMEKTRMKQVRGTLLLDSHRAAIAALSAQCQAI 176
            +   LE+K     R+QL +      + +E          LL +S    +  +    + +
Sbjct: 122 KS-CYLEIKQWYAYRKQLLKHQHAIQMKLEAFISTGTLNDLLRESIENELFRIDENIKEV 180

Query: 177 EAELAKRIGDDAELRRVLHILKSIPGIGERVATLLITDLPELGQ-RDRKAIASLAGLAPH 235
           + +L   I  D E  ++   L+S+PGIG + + LLI  L      ++ K I S  GL+P 
Sbjct: 181 DRQLNHLI--DQENGQLREQLESVPGIGPKTSLLLIVALRGFENFQNYKQIISYLGLSPR 238

Query: 236 VSQSGAAPPRAA--IAGGRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIA 293
           + +SG +    A     G   VR  LYMAA  A  ++    + Y+ LR +GK  +VA++A
Sbjct: 239 IYESGTSVKGKAKICKMGMSEVRKCLYMAARSAKSYNKTCMELYSRLRAKGKAHRVAMVA 298

Query: 294 IARKLLVTANALVKADTPY 312
           +  KL+  A A+VK+++ Y
Sbjct: 299 VINKLIKQAFAIVKSNSYY 317