Pairwise Alignments

Query, 273 a.a., helix-turn-helix transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 262 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  153 bits (386), Expect = 4e-42
 Identities = 83/241 (34%), Positives = 129/241 (53%), Gaps = 2/241 (0%)

Query: 21  RPVVAYGMASAMIGSFQLDMHCHAKGQIMLVQRGALSCRVDGGLWIVPPRSAVWIPGGAL 80
           RPV  YG   ++        H H   Q+     G L  +   G ++ PP+ AVWIP G  
Sbjct: 22  RPV--YGRTESLPNRALTRRHSHPWVQLSYAISGVLEIQTSVGRFVAPPQRAVWIPAGVP 79

Query: 81  HAIRATGRLEGYSAFVAAGIDVGLPQRCCAVSVTPLLRELLFRAARLPLLYDQDAATSRL 140
           H + ++   E  S ++   +     +RC  + V+ LLREL+   + LP+ Y +D    RL
Sbjct: 80  HRVFSSPHTEMRSLYLDCSVTAWAVERCHVLEVSSLLRELIRSFSELPVEYAEDGPDGRL 139

Query: 141 IAVLLDEIAAARIEDLHLPMPSDPRLRALADLMMAAPAERGSLEGWAARAGLSERTLGRL 200
             V+LD++AAA   DL LP+P DPRLR +   +   P ++ +L  W+ + G+SE+TL RL
Sbjct: 140 AQVVLDQLAAAPQVDLMLPLPLDPRLRHIYRSLNLRPEQQTTLSQWSQKLGVSEKTLSRL 199

Query: 201 ISRETGMSFGRWRQQLGVMLAVQWLAGGASIQQVAADLGYESVPSFVTMFRKTLGTSPGR 260
              +TG++F  WRQ+L ++ A+  L  G  +  VA   GYES  +F+  FR+    +PG 
Sbjct: 200 FLSDTGLTFRAWRQRLRLLTALPALEQGERVTDVALACGYESTSAFINAFRQQFEATPGE 259

Query: 261 Y 261
           +
Sbjct: 260 F 260