Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 328 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  294 bits (753), Expect = 2e-84
 Identities = 160/331 (48%), Positives = 218/331 (65%), Gaps = 18/331 (5%)

Query: 10  LIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQSVHIDGVL 69
           L++P  + V   S  T  A +  EP ERG+G TLGNALRRVLLSS+ G A   V I GV+
Sbjct: 5   LLKPKTINVEQVS--TNRAKVTLEPFERGYGHTLGNALRRVLLSSMTGHAPTEVTIAGVV 62

Query: 70  HEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTVGDIVVLN 129
           HE+SSI GV+EDV +++LN+K +  K+       + ++K G G VTA DIQT  D+ ++N
Sbjct: 63  HEYSSIDGVQEDVVNMLLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEIVN 122

Query: 130 PDLQLCTLDDGAEIRMEFTVNTGKGYV--AAERNRPEDAPIGLIPVDSLYSPVRKVSYKV 187
           P   + TL  GA++ M+  V  G+GYV  +  RN  +   IG I +D+ +SPV++VSY V
Sbjct: 123 PGHAIATLSAGAKLDMQIKVEKGRGYVPGSLRRNDDQTRSIGRIVLDASFSPVKRVSYTV 182

Query: 188 ENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVN--------FEEPRK 239
           E+ R  Q  D DKL + +ETNG+I PE+AV  +A+IL +QL VF          F+ P +
Sbjct: 183 ESARVEQRTDLDKLVLEIETNGSIGPEEAVRASAKILVEQLAVFAQLEGVELSAFDAPAQ 242

Query: 240 EVTQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGR 299
             +Q+      F+P  L+ VDELEL+VRSANCLK +NI YIGDL+Q++E E+L+TPN GR
Sbjct: 243 RSSQQ------FDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGR 296

Query: 300 KSLNEIKEVLAQMGLHLGMEVPGWPPENIDE 330
           KSLNEIKEVLA  GL LGM++  WPP  +D+
Sbjct: 297 KSLNEIKEVLASRGLTLGMKLENWPPAGLDK 327