Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 329 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  292 bits (747), Expect = 9e-84
 Identities = 157/330 (47%), Positives = 217/330 (65%), Gaps = 8/330 (2%)

Query: 3   IQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQS 62
           +Q +  E ++P  + +   S      TL  EPLERGFG TLGNALRR+LLSS+ G AV  
Sbjct: 1   MQGSVTEFLKPRLVDIEQVSSTHAKVTL--EPLERGFGHTLGNALRRILLSSMPGCAVTE 58

Query: 63  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTV 122
           V IDGVLHE+S+  GV+ED+ +I+LN+K +++++QG+    + + K G G VTA DI   
Sbjct: 59  VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD 118

Query: 123 GDIVVLNPDLQLCTL-DDGAEIRMEFTVNTGKGYVAAE---RNRPEDAPIGLIPVDSLYS 178
           GD+ ++ P   +C L D+ A I M   V  G+GYV A     +  ++ PIG + VD+ YS
Sbjct: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178

Query: 179 PVRKVSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPR 238
           PV +++Y VE  R  Q  D DKL + +ETNG I PE+A+  AA IL +QL  FV+  + R
Sbjct: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238

Query: 239 KEVTQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFG 298
           +   +E  P+  F+P  L+ VD+LEL+VRSANCLK + I YIGDLVQ++E E+L+TPN G
Sbjct: 239 QPEVKEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296

Query: 299 RKSLNEIKEVLAQMGLHLGMEVPGWPPENI 328
           +KSL EIK+VLA  GL LGM +  WPP +I
Sbjct: 297 KKSLTEIKDVLASRGLSLGMRLENWPPASI 326