Pairwise Alignments
Query, 1043 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009
Subject, 1039 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Serratia liquefaciens MT49
Score = 1059 bits (2738), Expect = 0.0
Identities = 550/1021 (53%), Positives = 732/1021 (71%)
Query: 2 GVSEPFIRRPIATSLLGVALMIGGLLGYLALPVSALPQVDFPTVQVSTQLPGASPDVVAS 61
G S FI RP+AT+LL +A+++ G++GY ALPVSALP+VD+PT+QV T PGASPDVV S
Sbjct: 11 GPSRLFILRPVATTLLMLAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVVTS 70
Query: 62 LITAPLERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAINAAAGILPK 121
ITAPLERQ GQ+ L M S SS G S V+LQF L +D A Q+VQAAIN+A +LP
Sbjct: 71 AITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLELPLDVAEQEVQAAINSATNLLPN 130
Query: 122 NLPYPPVYAKVNPADAPVMTLALTSTTVSLRTMSDLADTLMAQRLAQISGVGRVSVLGGL 181
+LPYPP+Y+KVNPAD P++TLA+TS+ + + + D+ +T +AQ+++Q++GVG V++ GG
Sbjct: 131 DLPYPPIYSKVNPADPPILTLAVTSSAMPMTQVEDMVETRVAQKISQVTGVGLVTISGGQ 190
Query: 182 KPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAANDQIAAADAY 241
+PAVRV+ + A +AAYG+ E +RTAI+NANV+ KGSLDG ++ T++ANDQ+ +AD Y
Sbjct: 191 RPAVRVKLNAAAVAAYGLDSETIRTAISNANVNSAKGSLDGPTRSVTLSANDQMKSADDY 250
Query: 242 RPIIVAYRNGSPVTIGDVAQIVDGLENERTGAWYQGTPAVILDIQRQPGANVIDVVKGIR 301
R +IVAY+NG+ + + D+A I G EN R AW PA++L+IQRQPG NVI IR
Sbjct: 251 RQLIVAYQNGAAIRLQDIATIEQGAENTRLAAWANKQPAIVLNIQRQPGVNVITTADSIR 310
Query: 302 AEIPRIQRLVPAGVKLTVVSDRTETIRASVHDVQFTLLLSVVLVTLVVLLFLRSMRATII 361
+P++ + +P V + V++DRT TIRASV DVQF LLL+V LV +V+ +FLR++ ATII
Sbjct: 311 EMLPQLIKSLPKSVDVKVLTDRTTTIRASVSDVQFELLLAVALVVMVIYVFLRNVPATII 370
Query: 362 AGVALPLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMEDGESPM 421
VA+PLSLI +F MYF+ FS++NL+LMALTI TGFVVDDAIV+IENI R++E GE P+
Sbjct: 371 PSVAVPLSLIGTFAAMYFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPL 430
Query: 422 QAALKGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSAIVSLTL 481
AALKGA EIGFT+ISLT SL+AV IPLLFM +VGR+FREFA+TL +A++ SA+VSLTL
Sbjct: 431 DAALKGAGEIGFTIISLTFSLVAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTL 490
Query: 482 TPMMCSRLLKHARDERQVPGLATITAWIDRGAEAYHRSLLWVLKHQRATLVVTFLTIAAT 541
TPMMC+R+L H +Q A + DR Y + L VL H TL V F T+ T
Sbjct: 491 TPMMCARMLSHESLRKQNRFSAASERFFDRVIARYGKWLKTVLNHPWLTLGVAFSTLVLT 550
Query: 542 LVLYAIAPKGFLPLQDTASITAVTEAGPAVSFAEMKARQTETAQAIEADPDVVGVVSVIG 601
++LY + PKGF P+QD I EA +VSF+ M RQ + A I DP V + S +G
Sbjct: 551 VLLYLLIPKGFFPVQDNGIIQGTLEAPQSVSFSNMAERQQQVAAEILKDPAVESLTSFVG 610
Query: 602 AGSVNPTPNVGRLVLTLKPRGDRKSDVGEVIERLKQRVAGIPGMTVYFQAVQDVQISTQA 661
N T N GRL + LKP +R + +I RL+Q+ A PG+ +Y Q VQD+ I TQ
Sbjct: 611 VDGSNATLNSGRLQINLKPLSERSDRIPAIITRLQQQSAQFPGVKLYLQPVQDLTIDTQV 670
Query: 662 SRSQYQYTLTATDAALLSQWANRLLAELRRDPLFRDVSTEAQEGGLRAALDVNRERAGQL 721
SR+QYQ+TL A LS W +L+AEL++ P DV++ Q+ GL A ++V+R+ A +L
Sbjct: 671 SRTQYQFTLQAMSLDELSLWVPQLMAELKQAPQLADVTSNWQDQGLVAYVNVDRDSASRL 730
Query: 722 GVSVQAINDTLNDAFAQRQISTIYGQANQYRVVLEAMPVYQQDPSILSKLYVPGNAGAQV 781
G+S+ +++ L +AF QR ISTIY QANQYRVVLE + LS++ + + G V
Sbjct: 731 GISMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHDVSTTPGLAALSEIRLTSSNGTIV 790
Query: 782 PISAVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEALKRIETIEKQIGMPGSIVG 841
P++ +A+++ PL+++H QFP+ +SFN+A + SLGEA+ I EK + MP I
Sbjct: 791 PLNTIAKIEERFGPLSVNHLDQFPAATISFNVAGNYSLGEAVDAITLAEKNLDMPKDITT 850
Query: 842 VFYGDAAEFSKALAGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAGVGAILALM 901
F G F AL G WLILAA+VA+YIVLGVLYES+IHP+TILSTLP+AGVGA+LALM
Sbjct: 851 QFQGATLAFQAALGGTLWLILAAVVAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALM 910
Query: 902 LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEAERGQGMSSYEAIVQACRLRFRPIMM 961
+ G +L VI +IGIILL+GIVKKNAIMMIDFAL AER QGM+ Y+AI QAC LRFRPI+M
Sbjct: 911 MAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMTPYDAIYQACLLRFRPILM 970
Query: 962 TTLAALFGALPLAVESGTGSELRFPLGISIIGGLLLSQLLTLYTTPVIYLALDRINRKLE 1021
TTLAAL GALPL + +G G+ELR PLG+ ++GGL++SQ+LTL+TTPVIYL D++ R
Sbjct: 971 TTLAALLGALPLMLSTGVGAELRHPLGVCMVGGLVMSQILTLFTTPVIYLLFDKLARNTR 1030
Query: 1022 R 1022
R
Sbjct: 1031 R 1031
Score = 62.8 bits (151), Expect = 1e-13
Identities = 104/520 (20%), Positives = 202/520 (38%), Gaps = 41/520 (7%)
Query: 3 VSEPFIRRPIATSLLGVALMIGGLLGYLALPVSALPQVDFPTVQVSTQLPGA-------- 54
++ P++ +A S L + +++ YL +P P D +Q + + P +
Sbjct: 533 LNHPWLTLGVAFSTLVLTVLL-----YLLIPKGFFPVQDNGIIQGTLEAPQSVSFSNMAE 587
Query: 55 -SPDVVASLITAPLERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAIN 113
V A ++ P L + +T + G Q++L+ L+ D +
Sbjct: 588 RQQQVAAEILKDPAVESLTSFVGVDGSNATLNSGRLQINLK-PLSERSDRIPAIITRLQQ 646
Query: 114 AAAGILPKNLPYPPVYAKVNPADAPVMTLALTSTTVSLRTMSDLADTLMAQ--RLAQISG 171
+A L PV T +SL +S LMA+ + Q++
Sbjct: 647 QSAQFPGVKLYLQPVQDLTIDTQVSRTQYQFTLQAMSLDELSLWVPQLMAELKQAPQLAD 706
Query: 172 VGRVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAA 231
V GL V V D A + GISM D+ A+ NA ++ Y +
Sbjct: 707 VTSNWQDQGLVAYVNVDRDSA--SRLGISMSDVDNALYNAFGQRLISTIYTQANQYRVVL 764
Query: 232 NDQIAAAD---AYRPIIVAYRNGSPVTIGDVAQIVDGLENERTGAWYQGTPAVILDIQRQ 288
++ A I + NG+ V + +A+I ER G P + + +
Sbjct: 765 EHDVSTTPGLAALSEIRLTSSNGTIVPLNTIAKI-----EERFG------PLSVNHLDQF 813
Query: 289 PGANVIDVVKGIRAEIPRIQRLVPAGVKLTVVSDRTE-------TIRASVHDVQFTLLLS 341
P A + V G + + + A L + D T +A++ + +L +
Sbjct: 814 PAATISFNVAGNYSLGEAVDAITLAEKNLDMPKDITTQFQGATLAFQAALGGTLWLILAA 873
Query: 342 VVLVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVD 401
VV + +V+ + S + LP + + + + G LD ++++ + + G V
Sbjct: 874 VVAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMMAGSELDVIAIIGIILLIGIVKK 933
Query: 402 DAIVMIE-NIVRHMEDGESPMQAALKGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMF 460
+AI+MI+ + E G +P A + ++ T++ + +PL+ +G+ +
Sbjct: 934 NAIMMIDFALAAEREQGMTPYDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELR 993
Query: 461 REFALTLTIAVVTSAIVSLTLTPMMCSRLLKHARDERQVP 500
+ + +V S I++L TP++ K AR+ R+ P
Sbjct: 994 HPLGVCMVGGLVMSQILTLFTTPVIYLLFDKLARNTRRQP 1033