Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  270 bits (691), Expect = 8e-77
 Identities = 154/341 (45%), Positives = 206/341 (60%), Gaps = 27/341 (7%)

Query: 319 RGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTRRDRPLIRVNC 378
           R ++G S AIQ   + ++ VA T A+VLI GESGTGKE++AR +H  S RRD P + VNC
Sbjct: 144 RSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRRDGPFVPVNC 203

Query: 379 AAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQ 438
            AIP EL ESE FGH +GAFTGA+  R GRFELA+GGTLFLDE+G++PL +Q KLLRVLQ
Sbjct: 204 GAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQ 263

Query: 439 EGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRRED 498
           E  FERVG  +T++VDVR+IAAT+++L+  ++ G FREDLY+RL+VFPIE  PLR+R ED
Sbjct: 264 ERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVED 323

Query: 499 IPLLAQHFLTNEARELKTELRLSQGDVRRLMRYDWPGNVRELQNVIERATILAQNG---- 554
           IPLL    ++    E +  +R +   +  L R+ WPGNVREL N++ER  I+   G    
Sbjct: 324 IPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGV 383

Query: 555 -------------------RLRLDLPESAGSHASATSGRQKPDARPVVMTVAD-LRNLER 594
                               LR D+ E    +             P  + + D L NLE+
Sbjct: 384 VELPKKFRYVDDEDEQLVDSLRTDMEERVAINGHTPDFGSTAMLPPEGLDLKDYLGNLEQ 443

Query: 595 DNIIAALRACKGKVFGDDGAAAMLDMKPTTLASRIKALGIT 635
             I  AL    G V     AA  L ++ TTL  +++  G++
Sbjct: 444 GLIQQALDDANGIV---ARAAERLRIRRTTLVEKMRKYGMS 481