Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 491 a.a., Transcriptional regulator FleQ from Pseudomonas putida KT2440

 Score =  269 bits (687), Expect = 2e-76
 Identities = 152/341 (44%), Positives = 207/341 (60%), Gaps = 27/341 (7%)

Query: 319 RGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTRRDRPLIRVNC 378
           R ++G S AIQ   + ++ VA T A+VLI GESGTGKE++AR +H  S RR+ P + VNC
Sbjct: 144 RSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNC 203

Query: 379 AAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQ 438
            AIP EL ESE FGH +GAFTGA+  R GRFELA+GGTLFLDE+G++PL +Q KLLRVLQ
Sbjct: 204 GAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQ 263

Query: 439 EGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRRED 498
           E  FERVG  +T+++DVR+IAAT+++L+  ++ G FREDLY+RL+VFPIE  PLR+R ED
Sbjct: 264 ERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323

Query: 499 IPLLAQHFLTNEARELKTELRLSQGDVRRLMRYDWPGNVRELQNVIERATILAQNG---- 554
           IPLL    ++    E +  +R +   +  L R+ WPGNVREL N++ER  I+   G    
Sbjct: 324 IPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGV 383

Query: 555 -------------------RLRLDLPESAGSHASATSGRQKPDARPVVMTVAD-LRNLER 594
                               LR DL E    +    +        P  + + D L +LE+
Sbjct: 384 SELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPNFSNHAMLPPEGLDLKDYLGSLEQ 443

Query: 595 DNIIAALRACKGKVFGDDGAAAMLDMKPTTLASRIKALGIT 635
             I  AL    G V     AA  L ++ TTL  +++  G++
Sbjct: 444 GLIQQALDDANGIV---ARAAERLRIRRTTLVEKMRKYGMS 481