Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 692 a.a., formate hydrogenlyase transcriptional activator from Escherichia coli BL21

 Score =  310 bits (794), Expect = 1e-88
 Identities = 179/347 (51%), Positives = 227/347 (65%), Gaps = 11/347 (3%)

Query: 290 ALAEVDRLRERLQLENDYLQEEIR-IETNPRGIIGQSEAIQTTLRQVKLVAPTAATVLIT 348
           A  E+ RL+ERL  EN  L E++  +++    IIG+SEA+ + L+QV++VA + +TVLI 
Sbjct: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408

Query: 349 GESGTGKELIARAIHEASTRRDRPLIRVNCAAIPRELFESEFFGHARGAFTGAVRDRIGR 408
           GE+GTGKELIARAIH  S R +R ++++NCAA+P  L ES+ FGH RGAFTGA   RIGR
Sbjct: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468

Query: 409 FELADGGTLFLDEVGEIPLELQSKLLRVLQEGNFERVGEERTRNVDVRLIAATNRDLKRE 468
           FELAD  +LFLDEVG++PLELQ KLLRVLQE  FER+G  +    DVRLIAATNRDLK+ 
Sbjct: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528

Query: 469 VQRGHFREDLYFRLSVFPIESVPLRDRREDIPLLAQHFLTNEARELKTEL-RLSQGDVRR 527
           V    FR DLY+RL+VFPI   PLR+R EDIPLLA+ F    AR L   +  +    +R 
Sbjct: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588

Query: 528 LMRYDWPGNVRELQNVIERATILAQNGRLRLDLPESAGSHASATSGRQKPDARPVVMTVA 587
           L   +WPGNVREL+NVIERA +L +   L+L LP+             +P+  P    VA
Sbjct: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV---------LPEPETPPAATVVA 639

Query: 588 DLRNLERDNIIAALRACKGKVFGDDGAAAMLDMKPTTLASRIKALGI 634
                E   I+  L+   G V G  GAA  L +K TTL SR+K LGI
Sbjct: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686