Pairwise Alignments

Query, 394 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 400 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  136 bits (342), Expect = 1e-36
 Identities = 107/391 (27%), Positives = 179/391 (45%), Gaps = 25/391 (6%)

Query: 2   FVGLTIPLTGVFSGDGGDLKLGYELAIAQINAGSDIAQKWGLKGKGVLGRQIRHKVSDTE 61
           F GL   ++G F+  G    +G  LA+ Q                 VLGR + +KV DTE
Sbjct: 34  FYGLK-SMSGAFASYGKFADMGSRLAVQQ--------------HPQVLGRALNYKVIDTE 78

Query: 62  GKPNLDVQSATQFIQRDKAIMVSGSVSSSSAIALEELGSREKVLYMVGIAGSNDITGKNC 121
           G     V+   + IQ+D A    G   SSSA+A+ +   +   ++M  + G++++TGK+C
Sbjct: 79  GNAGKAVRKVQEAIQQDGARFFQGCTLSSSALAVAKEVDKVGGVFMTPV-GADEVTGKDC 137

Query: 122 QRYGFRSQQNAYMAAKGLAPVVAKALGKNIKMAFLVPDYTYGHSVYDSFSKFATEQGWKQ 181
               FR     Y A +     + K L    +   + P Y +G ++ +       E G + 
Sbjct: 138 NLATFRWSVPTYGAIRETMVPLIKLLPDAKRWYTITPQYVFGEALLEGAKNVLKENGLEH 197

Query: 182 VAKEVVPLGTTDYSSALLNIANSGADVFVNIAFGADSVASTKQAEQFGVLKRMK-LVVPN 240
           +      L   ++S  L N   +  DV V + FG+ S  + +QA  FG+ +RMK L+V +
Sbjct: 198 IGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQSSNTLRQAVNFGIKERMKVLLVWS 257

Query: 241 LSSFQDKELGAELMQGVYGSCDFWFGLQDKFPLAKAFVDSFVAQNNYHPRWGAHIGYMQT 300
               Q +ELG+++++GVY    +W   Q   PL +  V    AQ   +P +     Y+ T
Sbjct: 258 AGLDQFQELGSDVLEGVYLGAQYWH--QVDTPLNRELVKLTQAQYGINPTYPLAADYIST 315

Query: 301 YLWAMSVERANTFNPVDVIKVMENSKAQPYVTTIGNVYFRAEDHQMVRPIPILRGKKPSE 360
            +   ++    +F+   V K M+      Y    G    RA DHQ+++   +L GK  ++
Sbjct: 316 KIMLDTIIATGSFDGPTVAKAMQGLS---YEGPTGKESIRAGDHQVIKDYYLLIGKATAD 372

Query: 361 MKHKEDFYDIIDLVDGEAVMNPPDLFGCKLG 391
           M  K+D   ++    G++   P +  GC LG
Sbjct: 373 MADKDDLAKVLSA--GQS-FPPVEATGCTLG 400