Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 619 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  810 bits (2093), Expect = 0.0
 Identities = 402/613 (65%), Positives = 474/613 (77%), Gaps = 27/613 (4%)

Query: 9   GFKLDNAGRRVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDA 68
           GF++DN GRR+VVDPVTRIEGH+R EVN+DSNNVIRNAVSTGTMWRG+EVILKGRDPRDA
Sbjct: 8   GFRMDNTGRRIVVDPVTRIEGHMRCEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDA 67

Query: 69  WAFTQRICGVCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHA 128
           WAF +RICGVCTG HALTSVRAVE+AL I +P NA+ IR +M   L VHDH VHFYHLHA
Sbjct: 68  WAFVERICGVCTGCHALTSVRAVEDALGIKIPLNAHLIREMMAKTLQVHDHAVHFYHLHA 127

Query: 129 LDWVDVVSALKADPKATSALAQSISP-WPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYW 187
           LDWVDVVS LKADPK TS L   +SP  P+SSPGYF+D+Q RL KFVESGQLGPF NGYW
Sbjct: 128 LDWVDVVSCLKADPKKTSELQHIVSPSHPLSSPGYFRDVQNRLKKFVESGQLGPFANGYW 187

Query: 188 GHPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCSINVDGTG 247
           G  AY LPPEANLMAV HYLEALD QKE VK+HTI+GGKNPHPN+LVGGVPC+IN+DG G
Sbjct: 188 GSKAYVLPPEANLMAVTHYLEALDLQKEWVKVHTIFGGKNPHPNYLVGGVPCAINIDGNG 247

Query: 248 AVGA-INIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKD--WLYGGGLSSKSVMSYG 304
           A GA IN+ERLN V + I + + F   VY+PD++AI   YK   WLYGGGLS+ +V  YG
Sbjct: 248 AAGAPINMERLNFVQARIQEMIDFNNNVYIPDVLAIGTIYKQAGWLYGGGLSATNVADYG 307

Query: 305 DLPEYANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKYADEGKGLHP 364
              +   D+S  +  LP GVI+NG+ N++  +D   P+Q+QEFVTHSWYKY DE KGLHP
Sbjct: 308 TYEKVPYDHS--THQLPGGVILNGDWNKIHEIDPRDPEQVQEFVTHSWYKYGDETKGLHP 365

Query: 365 YDGVTEPNFV-LGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQG 423
           +DGVTE N+   GPN KGTRT IE LDESAKYS++K+PRW+GHAVEVGPL+RYI+GYA  
Sbjct: 366 WDGVTEANYTPEGPNFKGTRTKIENLDESAKYSWIKSPRWRGHAVEVGPLSRYILGYAHA 425

Query: 424 ----------KPEFKEP----TEKLLKTLDVPVT------ALFSTLGRTAARGLECQWAA 463
                     K +  E        + K L +P T       L +T+GRT AR LE Q+AA
Sbjct: 426 TQGNKFCQRVKQQVDEAAVAINSAIPKALGMPETKYSAKQLLPTTIGRTLARALESQYAA 485

Query: 464 RKLRAAQDKLMASIKAGDLSTANTDKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRI 523
             +     +L+ +IKAGD STAN +KW PS+WPK+ KGVG   APRG L HW++IKD +I
Sbjct: 486 EMMMDDFKQLVGNIKAGDTSTANIEKWDPSTWPKEAKGVGTVAAPRGMLGHWIRIKDGKI 545

Query: 524 DNYQCVVPTTWNGSPRDPQGNIGAFEAALLDTPMADPNQPLEIIRTLHSFDPCLACSTHV 583
           +NYQCVVPTTWNGSPRD +G IGAFEA+L++TPM +P QPLEI+RTLHSFDPCLACSTHV
Sbjct: 546 ENYQCVVPTTWNGSPRDHKGQIGAFEASLMNTPMVNPEQPLEILRTLHSFDPCLACSTHV 605

Query: 584 MSEDGQEMAQVKV 596
           MSEDGQEM++V V
Sbjct: 606 MSEDGQEMSRVTV 618