Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 485 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  113 bits (283), Expect = 2e-29
 Identities = 91/283 (32%), Positives = 129/283 (45%), Gaps = 51/283 (18%)

Query: 301 MSYGDLPEYANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKYADEGK 360
           +SYG   +    ++     LP GV    +   +  VD +A   I E  TH+W   AD+  
Sbjct: 253 LSYGAYAQPGGGFA-----LPGGVW-RADTGRLDAVDAAA---ITEDATHAWL--ADDAG 301

Query: 361 GLHPYDGVTEPNFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGY 420
            LHP  G T+P+                 D++  Y++ KAPR  G  VE G +AR +   
Sbjct: 302 PLHPLVGQTKPD----------------PDKARGYTWNKAPRLAGEVVETGAIARQL--- 342

Query: 421 AQGKPEFKEPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAG 480
           A G P  +          D       +   R  AR LE    AR +   +D L A     
Sbjct: 343 AAGHPLVR----------DAVARHGGNVYTRVLARALEL---ARVVPLMEDWLGALRPTE 389

Query: 481 DLSTANTDKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRIDNYQCVVPTTWNGSPRD 540
                      PS  P +  G+G +EA RG+L HWV ++  RI NYQ V PT+WN SPRD
Sbjct: 390 PFCV-------PSDLPDEGSGMGLSEAARGSLGHWVVVRRGRIANYQIVAPTSWNFSPRD 442

Query: 541 PQGNIGAFEAALLDTPMADPNQ-PLEIIRTLHSFDPCLACSTH 582
             G  GA E AL++ P+ +  + P+ +   + SFDPC+ C+ H
Sbjct: 443 AAGTPGALEQALVNAPVREGEKTPVAVQHIVRSFDPCMVCTVH 485



 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 18  RVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRICG 77
           R++V P  R+EG L V+++V  + V    V+  TM+RG E IL+G+ P DA  +  RICG
Sbjct: 3   RLLVGPFNRVEGDLEVQLDVQGDRVASAQVNA-TMYRGFEQILQGKAPHDALVYVPRICG 61

Query: 78  VCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVSA 137
           +C+ + ++ S RA+     I +P N     N++     + DHL HFY     D+   V A
Sbjct: 62  ICSVSQSVASARALAALGGIAMPANGQHASNVILATENLADHLTHFYLFFMPDFTRPVYA 121

Query: 138 LKA 140
             A
Sbjct: 122 AHA 124