Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 567 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  494 bits (1273), Expect = e-144
 Identities = 265/593 (44%), Positives = 365/593 (61%), Gaps = 42/593 (7%)

Query: 17  RRVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRIC 76
           +R+ +DPVTRIEGHLR++  ++ N V+  A ++GTMWRG+E I+K RDPRDAW   QRIC
Sbjct: 3   QRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61

Query: 77  GVCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVS 136
           GVCT THA++SVRA E+AL I+VP NA  IRNI+  A   HDH+VHFY L ALDWVD+ S
Sbjct: 62  GVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121

Query: 137 ALKADPKATSALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWGHPAYKLPP 196
           ALKADP+  SA+   +S W ++S   F  +Q ++   V SGQLG F NGYWGHPA +LPP
Sbjct: 122 ALKADPEKASAMLDGVSSWHLNSAQEFTKVQNKIKDLVASGQLGIFANGYWGHPAMQLPP 181

Query: 197 EANLMAVAHYLEALDFQKEIVKIHTIYGGKNPH-PNWLVGGVPCSINVDGTGAVGAINIE 255
           E NL+AVAHYL+AL+ Q++  ++  + GGK+PH  N  VGGV   IN+D   ++G +N+E
Sbjct: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNLAVGGVANPINLD---SIGTLNLE 238

Query: 256 RLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWLYGGGLSSKSVMSYGDLPEYANDYSD 315
           RL  + S ID+   FVEQVY  D   IA +Y +WL  G    K  ++Y   PE+  D  +
Sbjct: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAYYPEWLERG----KGAVNYLSAPEFPTDGKN 294

Query: 316 KSLMLPRGVIINGNLNEVLPVDLSAPD----QIQEFVTHSWYKYADEGKGLHPYDGVTEP 371
            S + P G I N +L+   P+   + +     IQE   H+WYK  DE     P++G T P
Sbjct: 295 GSFLFPGGYITNADLSTYRPITSHSDEFLIKGIQESAKHAWYK--DEAPQA-PWEGTTIP 351

Query: 372 NFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEFKEPT 431
            +             +   +  KYS++K+P + G  VEVGPLA  +   A G+   +   
Sbjct: 352 AY-------------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRESTQTKL 398

Query: 432 EKLL--------KTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLS 483
            +++        KTL+  +  L STLGR   R + C      L+   + L+ +I  GD +
Sbjct: 399 NEIIALYQKLTGKTLE--MAQLHSTLGRIIGRTVHCCELQNILQDQYNALIVNIGKGDYT 456

Query: 484 TANTDKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRIDNYQCVVPTTWNGSPRDPQG 543
           T        +    + KGVGF EAPRG L+HW+ IKD  I NYQ VVP+TWN  PR+   
Sbjct: 457 TFVKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFND 513

Query: 544 NIGAFEAALLDTPMADPNQPLEIIRTLHSFDPCLACSTHVMSEDGQEMAQVKV 596
           ++G +E +L+ TP+ADP +PLE++RT+HSFDPC+AC+ HV+  DG E+  VKV
Sbjct: 514 DVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566