Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 600 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  905 bits (2339), Expect = 0.0
 Identities = 421/591 (71%), Positives = 501/591 (84%), Gaps = 3/591 (0%)

Query: 9   GFKLDNAGRRVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDA 68
           GF LDN+GRR+VVDPVTRIEGH+R EVN+DSNNVI NAVSTGTMWRG+EVILKGRDPRDA
Sbjct: 9   GFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDA 68

Query: 69  WAFTQRICGVCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHA 128
           WAF +RICGVCTGTHALTS+RAVENAL I +P+NAN IRN+MQ  L+VHDHLVHFYHLHA
Sbjct: 69  WAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128

Query: 129 LDWVDVVSALKADPKATSALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWG 188
           LDWVDVV+ALKADP  TSA+AQS+S WP+SSPGYF+DLQ RL +F+ESGQLGPF+NGYWG
Sbjct: 129 LDWVDVVAALKADPHQTSAIAQSLSAWPLSSPGYFRDLQNRLKRFIESGQLGPFRNGYWG 188

Query: 189 HPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCSINVDGTGA 248
           HPA KLPPEANL+AVAHYLEALDFQKEIVKIHT++GGKNPHPNWLVGGVPC+IN+D TGA
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248

Query: 249 VGAINIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWL-YGGGLSSKSVMSYGDLP 307
           VGA+N+ERLNLVSSII +   F EQVY+PD++ IA +YKDW   GGGLSS ++++YG+ P
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308

Query: 308 EYANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKY--ADEGKGLHPY 365
           +  NDYS  +L+LPRG IING  +E+ PVDL+APD+IQEFVTHSWY Y   +  KGLHP+
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368

Query: 366 DGVTEPNFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKP 425
           DG+TEP  V+G + KGT+T IE +DESAKYS++K+PRWKGHA+EVGPLARY+IGY Q KP
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428

Query: 426 EFKEPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTA 485
           EFKEP ++LL  L +P  ALFSTLGRTAAR LE  WA   L+   D+LM ++K+GD +TA
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488

Query: 486 NTDKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRIDNYQCVVPTTWNGSPRDPQGNI 545
           N   W P +WP   KGVGF+EAPRGAL HW+KI + +ID+YQCVVPTTWN  PRD +G I
Sbjct: 489 NVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKIANQKIDSYQCVVPTTWNAGPRDDKGQI 548

Query: 546 GAFEAALLDTPMADPNQPLEIIRTLHSFDPCLACSTHVMSEDGQEMAQVKV 596
           GA+EAAL+ T +A P+QPLEI+RTLHSFDPCLACSTHV+   G E+ +V+V
Sbjct: 549 GAYEAALMGTKLAVPDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQV 599