Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 567 a.a., hydrogenase 2, large subunit from Escherichia coli BL21

 Score =  503 bits (1294), Expect = e-146
 Identities = 268/591 (45%), Positives = 363/591 (61%), Gaps = 38/591 (6%)

Query: 17  RRVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRIC 76
           +R+ +DPVTRIEGHLR++  ++ N V+  A ++GTMWRG+E I+K RDPRDAW   QRIC
Sbjct: 3   QRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61

Query: 77  GVCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVS 136
           GVCT THAL+SVRA E+AL I+VP NA  IRNI+  A   HDH+VHFY L ALDWVD+ S
Sbjct: 62  GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121

Query: 137 ALKADPKATSALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWGHPAYKLPP 196
           AL+ADP   S + + +S W ++SP  F  +Q ++   V SGQLG F NGYWGHPA KLPP
Sbjct: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181

Query: 197 EANLMAVAHYLEALDFQKEIVKIHTIYGGKNPH-PNWLVGGVPCSINVDGTGAVGAINIE 255
           E NL+AVAHYL+AL+ Q++  ++  + GGK PH  N  VGGV   IN+DG   +G +N+E
Sbjct: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG---LGVLNLE 238

Query: 256 RLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWLYGGGLSSKSVMSYGDLPEYANDYSD 315
           RL  + S ID+   FVEQVY  D   IA FY +WL  G    K  ++Y  +PE+  D  +
Sbjct: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG----KGAVNYLSVPEFPTDSKN 294

Query: 316 KSLMLPRGVIINGNLNEVLPVDLSAPDQ----IQEFVTHSWYKYADEGKGLHPYDGVTEP 371
            S + P G I N +L+   P+   + +     IQE   HSWYK  DE     P++G T P
Sbjct: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK--DEAPQA-PWEGTTIP 351

Query: 372 NFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEFKEPT 431
            +             +   +  KYS++K+P + G  VEVGPLA  ++  A G+   +   
Sbjct: 352 AY-------------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398

Query: 432 EKLLKTLD------VPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTA 485
            +++          + V  L STLGR   R + C      L+     L+ +I  GD +T 
Sbjct: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458

Query: 486 NTDKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRIDNYQCVVPTTWNGSPRDPQGNI 545
                  +    + KGVGF EAPRG L+HW+ IKD  I NYQ VVP+TWN  PR+   ++
Sbjct: 459 VKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDV 515

Query: 546 GAFEAALLDTPMADPNQPLEIIRTLHSFDPCLACSTHVMSEDGQEMAQVKV 596
           G +E +L+ TP+ADPN+PLE++RT+HSFDPC+AC+ HV+  DG E+  VKV
Sbjct: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566