Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 569 a.a., hydrogenase 3, large subunit from Escherichia coli BL21

 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 29  GHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAF-TQRICGVCTGTHALTS 87
           GH R+ V  D  N+I        + RG+E + + R   +   F + R+CG+C   H+   
Sbjct: 195 GHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252

Query: 88  VRAVENALKINVPENANTIRNIMQLALYVHDHLVH 122
             +VENA+ I VPE A  IR I+     +H HL++
Sbjct: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 20/89 (22%)

Query: 502 VGFTEAPRGALAHWVKIKDT-RIDNYQCVVPT--TWNGSPRDPQGNIGAFEAALLDTPMA 558
           +GF EAPRG   HW    D  ++  ++C   T   W       +GN       + D P+ 
Sbjct: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN------TVSDAPL- 523

Query: 559 DPNQPLEIIRTLHSFDPCLACSTHVMSED 587
                      + S DPC +C+  +   D
Sbjct: 524 ----------IIGSLDPCYSCTDRMTVVD 542