Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 555 a.a., hydrogenase 4, subunit from Escherichia coli BL21

 Score = 53.1 bits (126), Expect = 3e-11
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 29  GHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAF-TQRICGVCTGTHALTS 87
           GH R+ V  D   ++        + RG+E + + R   +   F + R+CG+C   H++  
Sbjct: 197 GHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254

Query: 88  VRAVENALKINVPENANTIRNIMQLALYVHDHLVH 122
             +VENAL I VP+ A+TIR+I+     +H HL++
Sbjct: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 20/89 (22%)

Query: 502 VGFTEAPRGALAHWVKIKDT-RIDNYQCVVPT--TWNGSPRDPQGNIGAFEAALLDTPMA 558
           +GF EAPRG   HW  + D  ++  ++C   T   W       +GN       + D P+ 
Sbjct: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN------TVSDAPL- 509

Query: 559 DPNQPLEIIRTLHSFDPCLACSTHVMSED 587
                      + S DPC +C+  V   D
Sbjct: 510 ----------IIGSLDPCYSCTDRVTLVD 528