Pairwise Alignments

Query, 597 a.a., nickel-dependent hydrogenase large subunit from Rhodopseudomonas palustris CGA009

Subject, 597 a.a., hydrogenase 1, large subunit from Escherichia coli BL21

 Score =  801 bits (2068), Expect = 0.0
 Identities = 369/589 (62%), Positives = 468/589 (79%), Gaps = 2/589 (0%)

Query: 9   GFKLDNAGRRVVVDPVTRIEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDA 68
           G+ ++NAGRR+VVDP+TRIEGH+R EVN++  NVI NAVS GTM+RG+E+IL+GRDPRDA
Sbjct: 9   GYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDA 68

Query: 69  WAFTQRICGVCTGTHALTSVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHA 128
           WAF +RICGVCTG HAL SV A+E+A+ I VP+NAN IRNIM   L+ HDHLVHFY L  
Sbjct: 69  WAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128

Query: 129 LDWVDVVSALKADPKATSALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWG 188
           +DW+DV+ ALKADP+ TS LAQS+S WP SSPGYF D+Q RL KFVE GQLG F+NGYWG
Sbjct: 129 MDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188

Query: 189 HPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCSINVDGTGA 248
           HP YKLPPEANLM  AHYLEALDFQ+EIVKIH ++GGKNPHPNW+VGG+PC+IN+D +GA
Sbjct: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGA 248

Query: 249 VGAINIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWL-YGGGLSSKSVMSYGDLP 307
           VGA+N+ERLNLV SII +T  F+  V +PD +AI  F K W   G GLS K V+SYG  P
Sbjct: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308

Query: 308 EYANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKYADEGKGLHPYDG 367
           + AND+ +KSL++P G +ING+ N VLPVDL  P Q+QEFV H+WY+Y ++  G HP+DG
Sbjct: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368

Query: 368 VTEPNFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEF 427
           +T+P +  G + KG+ TNI+ L+E  +YS++KAPRW+G+A+EVGPLAR +I Y +G    
Sbjct: 369 ITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427

Query: 428 KEPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTANT 487
            E  ++++  L++P++ + STLGR   R  E QWAA KL+   DKLM ++K G+L+TA+T
Sbjct: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487

Query: 488 DKWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDTRIDNYQCVVPTTWNGSPRDPQGNIGA 547
           +KW P++WP + +GVGFTEAPRGAL HW  I+D +ID YQCVVPTTWN SPRDP+G IGA
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547

Query: 548 FEAALLDTPMADPNQPLEIIRTLHSFDPCLACSTHVMSEDGQEMAQVKV 596
           +EAAL++T MA P QPLEI+RTLHSFDPCLACSTHV+ +DG E+  V+V
Sbjct: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596