Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 360 a.a., Uptake hydrogenase small subunit precursor (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 29/279 (10%)

Query: 6   ILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERIASGE 65
           +LWL G  C  CT + +   H     ++    I L +  ++  A   +A AI E I +  
Sbjct: 51  VLWLHGLECTCCTESFIRSAHP-LAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKY 109

Query: 66  QKLGALVLEGAVLRGP--NGSGRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFGGV 123
           +    L +EG     P  N  G F +   +G+  +  +  +A  A  ++A GSCA++G V
Sbjct: 110 KGQYILAVEG----NPPLNEDGMFCIQ--SGKPFVEKLKHVAKDAKAIIAWGSCASWGCV 163

Query: 124 PMAGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALALGG 183
             A  NPT A+ +     +               P+I + GC P P  ++  +  + L  
Sbjct: 164 QAAKPNPTQATPIHKVITDK--------------PIIKVPGCPPIPEVMTGVITYM-LTF 208

Query: 184 VDTAALDAFGRPRFFADHLAHHGCARNEYYE----FKASAEELSQQGCLMEHLGCKATQA 239
                LD  GRP+ F     H  C R  +++     +A  +E +++G  +  +GCK    
Sbjct: 209 DRVPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEAWDDESARKGYCLYKVGCKGPTT 268

Query: 240 VGDCNQRGWN-GSGSCTSGGYACIACTSPGFESSQGFME 277
              C+   WN G+      G+ CI C+  GF     F +
Sbjct: 269 YNACSTVQWNEGTSFPIKAGHGCIGCSEDGFWDKGSFYD 307