Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 333 a.a., Uptake hydrogenase small subunit precursor (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  408 bits (1049), Expect = e-119
 Identities = 192/324 (59%), Positives = 233/324 (71%), Gaps = 1/324 (0%)

Query: 3   SFDILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERIA 62
           + ++LWLQ   CGGC+M+ L    + +   L+  G++LLWHPS+S  + +E + + + + 
Sbjct: 2   ALNVLWLQSGGCGGCSMSLLCADTTDFQGHLRDAGVNLLWHPSLSMESGDELLDLLDAVL 61

Query: 63  SGEQKLGALVLEGAVLRGPNGSGRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFGG 122
            G  +L AL +EG++LRGPNG+GRF+ML GT   M+ WV  L+ RA +V+A GSCAA+GG
Sbjct: 62  DGRTRLDALCVEGSLLRGPNGTGRFHMLAGTQLPMIEWVKRLSARAKHVLAVGSCAAWGG 121

Query: 123 VPMAGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALALG 182
           +   G NPTDA GLQY   E GG+LG AFRS +GLPVINIAGC  HP W+ +TL ALA  
Sbjct: 122 ITAGGDNPTDACGLQYEDDEAGGLLGAAFRSASGLPVINIAGCPTHPSWVIDTLMALAAD 181

Query: 183 GVDTAALDAFGRPRFFADHLAHHGCARNEYYEFKASAEELSQQGCLMEHLGCKATQAVGD 242
                 LD   RPRF+AD L HHGC RNEYYEFKASAE+ S  GC+MEH+GCK TQ   D
Sbjct: 182 SFGAGELDPLNRPRFYADQLVHHGCTRNEYYEFKASAEKPSDLGCMMEHMGCKGTQVHAD 241

Query: 243 CNQRGWNGSGSCTSGGYACIACTSPGF-ESSQGFMETAKLAGIPVGLPLDMPKAWFVALA 301
           CN R WNG GSCT GGYACIACT PGF E    F ET KLAGIP+GLP DMPKAWFVALA
Sbjct: 242 CNTRLWNGEGSCTRGGYACIACTEPGFQEPGHPFHETPKLAGIPIGLPTDMPKAWFVALA 301

Query: 302 ALSKSATPKRVRANAAADHIVVPP 325
           +LSKSATPKRV+ NA ADH+VV P
Sbjct: 302 SLSKSATPKRVKHNAVADHLVVTP 325