Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 372 a.a., hydrogenase 2, small subunit from Escherichia coli BL21

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 78/283 (27%), Positives = 116/283 (40%), Gaps = 28/283 (9%)

Query: 6   ILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERIASGE 65
           ++W+    C GCT + L   H      L    I L +H  +S A   +            
Sbjct: 51  VIWIGAQECTGCTESLLRATHPT-VENLVLETISLEYHEVLSAAFGHQVEENKHNALEKY 109

Query: 66  QKLGALVLEGAVLRGPNGSGRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFGGVPM 125
           +    LV++G++    NG   + M+ G    ++  +   A  A  ++A GSC+A+GGV  
Sbjct: 110 KGQYVLVVDGSIPLKDNGI--YCMVAG--EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165

Query: 126 AGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALALGGVD 185
           AG NPT A  LQ                  G  VINI GC P+P     T+A +   G  
Sbjct: 166 AGVNPTGAVSLQEVL--------------PGKTVINIPGCPPNPHNFLATVAHIITYG-K 210

Query: 186 TAALDAFGRPRFFADHLAHHGCARNEYYEFKASAEELSQQG-----CLMEHLGCKATQAV 240
              LD   RP F    L H  C R  +++    A+E   +G     CL  HLGCK  +  
Sbjct: 211 PPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY-HLGCKGPETY 269

Query: 241 GDCNQRGWNGSGSC--TSGGYACIACTSPGFESSQGFMETAKL 281
           G+C+   +   G     + G+ C  C   G    +G  + A +
Sbjct: 270 GNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANV 312