Pairwise Alignments

Query, 547 a.a., cyclohexanecarboxylate-CoA ligase from Rhodopseudomonas palustris CGA009

Subject, 540 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  213 bits (542), Expect = 2e-59
 Identities = 174/517 (33%), Positives = 241/517 (46%), Gaps = 48/517 (9%)

Query: 51  GAVRRFSYRELATLADRVAVGLNRLGVGRGDVVAMQLPNWWQFTVLYLACSRIGAVLNPL 110
           GA+RR +++E      R+A  L   G+GRGD VA+ LPN       +      GAVLN L
Sbjct: 40  GAIRR-NWQETYQRCRRLASALAGRGIGRGDTVAVMLPNTPTMLEAHFGVPMTGAVLNTL 98

Query: 111 MPIFRERELSFMLKHGDAKVLVVPKSFRGFDHEAMARSLQPDLPALRTIVVVDGGGADDF 170
                   ++FML+HG+AKVL+  + F      A+A    P L       VVD    DD 
Sbjct: 99  NVRLDAEAIAFMLQHGEAKVLITDREFHAVIEGALALLEHPPL-------VVD---VDD- 147

Query: 171 DTLLTTPEWEK-----QPDAAAILQGSRPS-----PDDITQLI---YTSGTTGEPKGVMH 217
                 PE+ +     Q D  A+L    P      PDD  Q I   YTSGTTG PKGV++
Sbjct: 148 ------PEYGEGRAVSQLDYEALLNEGDPEFAWEWPDDEWQAISLNYTSGTTGNPKGVVY 201

Query: 218 SANTLMANIVPYAQRLALRESDVILMASPMAHQTGFMYGLMMPIMLRASAVLQDIWEPTK 277
                  N +      A+    V L   PM H  G+ Y   +  +      L+ + +P K
Sbjct: 202 HHRGAYLNALGNQMTWAMGHRPVYLWTLPMFHCNGWCYPWTITALAGTHVFLRRV-DPQK 260

Query: 278 AAELIRTERVTFTMASTPFLTDLTRVVKESGEPVPSLKTFLCAGAPIPGPLVEQAQAGLG 337
              LIR  +V+    +   L  L  + + +   +      + AGA  P  ++   +  +G
Sbjct: 261 ILTLIREHKVSHLCGAPIVLNALVNMPEAAKAAIEHPVQAMVAGAAPPAKVIGAVEQ-MG 319

Query: 338 AKIVSAWGMTE-NGAVTLIKLDDDDKLASTTDGCPLP---GVEVKVIDG----DGKTLPP 389
            K+   +G+TE  G VT+    D+    S  +   +    GV    +DG    D +TL P
Sbjct: 320 IKVTHTYGLTEVYGPVTVCAWHDEWDALSLEERARIKSRQGVRYPTLDGLMVADPQTLQP 379

Query: 390 -----NQIGRLVVRSCSNFGGYLKRPHWNGTD-ADGWFDTGDLAYMTADGYIRISGRSKD 443
                + +G + +R  +   GYLK P         GWF TGDLA   ADGYI I  R KD
Sbjct: 380 VPRDGDTLGEIFMRGNTVMKGYLKNPEATAEAFRGGWFHTGDLAVWHADGYIEIKDRLKD 439

Query: 444 VIIRGGENIPVVEVEALLYKHPAVAQVAIVAYPDERLGERACAVVVPKTGASIDFAAMVE 503
           +II GGENI  +EVE  LYKH AV + A+VA PDE+ GE  CA V  K G      A + 
Sbjct: 440 IIISGGENISTIEVEDALYKHSAVLEAAVVARPDEKWGETPCAFVALKPGREDTREADIT 499

Query: 504 FLKAQKLALQYIPERLVVRDAMPATPSGKIQKFRLRE 540
               + LA   +P + VV   +P T +GKIQK+ LR+
Sbjct: 500 SWCREHLAGFKVP-KTVVFGELPKTSTGKIQKYVLRD 535