Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score =  201 bits (510), Expect = 3e-56
 Identities = 141/308 (45%), Positives = 179/308 (58%), Gaps = 16/308 (5%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D  L + FLD +  E+G S NT  +YR DLA  + +L    +S+  A    +  +LA   
Sbjct: 5   DHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRL 64

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
           ++G+   S AR LS LR  FR+LL E++ A DP   +  P+ G+ LPK LS ADV+ LL 
Sbjct: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALL- 123

Query: 150 CARQEIDAAEG-GARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 208
              Q  D  E  G R RA     +LEVLYA GLRV+ELVSL L        ++ V GKG 
Sbjct: 124 ---QAPDLGEAIGQRDRA-----MLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGS 175

Query: 209 KERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSF-GESGYLTRQHFARDLKDL 267
           KERLVP+   A   + RY  +  A     +G     LFPS  GE   +TRQ F   +K  
Sbjct: 176 KERLVPMGEEAVVWLERYQRDGRAELL--NGRPSDVLFPSQRGEQ--MTRQTFWHRIKHH 231

Query: 268 AARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSL 327
           A  AG+   L SPH LRHAFA+HLL++GADLR+VQ LLGHSD+STTQIYTHV + RL+ L
Sbjct: 232 ARVAGIDKPL-SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQL 290

Query: 328 VRDLHPLG 335
               HP G
Sbjct: 291 HAQHHPRG 298