Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 306 a.a., Tyrosine recombinase XerD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  195 bits (495), Expect = 1e-54
 Identities = 131/309 (42%), Positives = 179/309 (57%), Gaps = 19/309 (6%)

Query: 32  GLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLDNR 91
           G+   F+D +  E+G S NTLDAYRRDL  L  +L+    ++     A L  Y +D    
Sbjct: 12  GIAGAFIDSLWLEEGLSRNTLDAYRRDLVLLGQWLAGHGKTLPETSEADLNQYFSDRHAE 71

Query: 92  GFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLACA 151
             AT++  RRL+  +  FR+ L ER+   DP   L   ++   +PK +S A V+ LL   
Sbjct: 72  TRATTA-NRRLTVFKRYFRWALRERVIQVDPTLRLVPARQPLRVPKTMSEAQVEALL--- 127

Query: 152 RQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKER 211
               +A + G  L   R  C+LE++YA+GLRVSELV+L       +  ++ + GKG+KER
Sbjct: 128 ----NAPDVGTPL-GLRDRCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITGKGNKER 182

Query: 212 LVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSF-----GESGYLTRQHFARDLKD 266
           LVP    A Q + RYL +  A     +G   + LF +      GE+  +TR  F + +K 
Sbjct: 183 LVPFGQLAGQWLQRYLGQ--ARVEILNGQQSEDLFVTSRGARAGEA--MTRAMFWQLVKK 238

Query: 267 LAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKS 326
            AA+AG+   L SPH LRHAFA+HLL++GADLR VQ LLGH+DISTT IYTHV  ERLKS
Sbjct: 239 YAAQAGITSPL-SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKS 297

Query: 327 LVRDLHPLG 335
           +V   HP G
Sbjct: 298 IVAQHHPRG 306