Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Serratia liquefaciens MT49

 Score =  228 bits (582), Expect = 1e-64
 Identities = 142/306 (46%), Positives = 184/306 (60%), Gaps = 15/306 (4%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D  L E FLD +  E+  + NTL +YR DL  L  +L+++ +S+  A    L+++LA+  
Sbjct: 5   DHALIEQFLDALWLERNLAENTLASYRLDLQALVAWLNQQNISLVKAQALDLQAFLAERV 64

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
             G+  +S AR LSA+R LF++L  E +R DDP A+LA PK  + LPK LS A VD LL 
Sbjct: 65  EGGYKATSSARLLSAMRRLFQYLYRENMRTDDPTALLASPKLPQRLPKDLSEAQVDALLQ 124

Query: 150 --CARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKG 207
             C  Q ++  +            +LEVLYATGLRVSELV L +S       ++ V GKG
Sbjct: 125 APCVDQPLELRD----------KAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKG 174

Query: 208 DKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDL 267
           +KERLVPL   A   +  YLE         +G A   LFPS      +TRQ F   +K  
Sbjct: 175 NKERLVPLGEEAVYWIENYLEHGRPWMV--NGQALDVLFPS-NRCQQMTRQTFWHRIKHY 231

Query: 268 AARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSL 327
           A  AG+    +SPHVLRHAFA+HLL++GADLR+VQ LLGHSD+STTQIYTHV  ERLK L
Sbjct: 232 AILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 291

Query: 328 VRDLHP 333
            +  HP
Sbjct: 292 HQQHHP 297