Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 298 a.a., Tyrosine recombinase XerD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  215 bits (547), Expect = 1e-60
 Identities = 138/304 (45%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D    E FLD +  E+  + NTL AYRRDL+ +  +L  R  ++ +A    L++ LA+  
Sbjct: 4   DLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERV 63

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
             G+  +S AR LSA+R  F+ L  E+ R DDP+A LA PK  + LPK LS A V++LL 
Sbjct: 64  EGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL- 122

Query: 150 CARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDK 209
               +    +    LR      +LEVLYATGLRVSELV L +S       ++ V GKG+K
Sbjct: 123 ----QAPLIDQPLELRD---KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175

Query: 210 ERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAA 269
           ERLVPL   A   +  YLE         +G +   LFPS   +  +TRQ F   +K  A 
Sbjct: 176 ERLVPLGEEAVYWLETYLEH--GRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIKHYAV 232

Query: 270 RAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVR 329
            AG+    +SPHVLRHAFA+HLL++GADLR+VQ LLGHSD+STTQIYTHV  ERL+ L +
Sbjct: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292

Query: 330 DLHP 333
             HP
Sbjct: 293 QHHP 296