Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  222 bits (565), Expect = 1e-62
 Identities = 140/304 (46%), Positives = 186/304 (61%), Gaps = 11/304 (3%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D    E FLD +  E+  + NTL+AYRRDL+ +  +L  R L++ +A +  L++ LA+  
Sbjct: 4   DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
             G+  +S AR LSA+R LF++L  E+ R DDP+A LA PK  + LPK LS A V++LL 
Sbjct: 64  EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL- 122

Query: 150 CARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDK 209
               +    +    LR      +LEVLYATGLRVSELV L +S       ++ V GKG+K
Sbjct: 123 ----QAPLIDQPLELRD---KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175

Query: 210 ERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAA 269
           ERLVPL   A   +  YLE         +G +   LFPS   +  +TRQ F   +K  A 
Sbjct: 176 ERLVPLGEEAVYWLETYLEH--GRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIKHYAV 232

Query: 270 RAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVR 329
            AG+    +SPHVLRHAFA+HLL++GADLR+VQ LLGHSD+STTQIYTHV  ERL+ L +
Sbjct: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292

Query: 330 DLHP 333
             HP
Sbjct: 293 QHHP 296