Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score =  323 bits (828), Expect = 4e-93
 Identities = 173/323 (53%), Positives = 224/323 (69%), Gaps = 11/323 (3%)

Query: 24  RPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRS 83
           +P +  D    E FL+M++AE+GA+ANTL +Y  DLADL  FL RR  S+  A T  L +
Sbjct: 4   QPMAGRDGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSA 63

Query: 84  YLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIAD 143
           YL  L  +GFA +S ARRLS++R  +RFL SE +R DDP  I+  P++G +LPK +S+AD
Sbjct: 64  YLTHLAAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVAD 123

Query: 144 VDQLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVV 203
           V++LL  A QE  A EG  +L   R++ LLE+LYATG+RVSELVSLP+   R++ R +++
Sbjct: 124 VNRLLGLAAQEA-ATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMI 182

Query: 204 RGKGDKERLVPLNAGAKQAMARY----------LEEMAAAKAPKDGPAPKWLFPSFGESG 253
           RGKG+K+R+V L+  A +AM +Y            + AA++   D     WLFPS  + G
Sbjct: 183 RGKGNKDRMVLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEG 242

Query: 254 YLTRQHFARDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTT 313
           +L RQ FARDLKD+A RAGL    VSPHVLRHAFASHLL NGADLR VQ LLGHSDISTT
Sbjct: 243 HLPRQVFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTT 302

Query: 314 QIYTHVVEERLKSLVRDLHPLGE 336
           QIYTHV+EERL+ LV+  HPL +
Sbjct: 303 QIYTHVLEERLQELVQTHHPLAK 325