Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 658 a.a., ATP-dependent DNA helicase Rep from Xanthomonas campestris pv. campestris strain 8004

 Score =  387 bits (993), Expect = e-111
 Identities = 249/648 (38%), Positives = 361/648 (55%), Gaps = 31/648 (4%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           ++ LN  Q  AV    G  LVLAGAGSGKTRV+V +IA LI + +     I ++TFTNK+
Sbjct: 1   MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60

Query: 70  AAEMRQRI-EQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EMR+R+ +++ G    G+ + TFH L  + L+     A L + F I DSDD    IK 
Sbjct: 61  AKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD 120

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMRE-----VYTAYEQA 183
           +M     D        A+  I+  K+ G+ P+   A       + RE     +Y  Y+  
Sbjct: 121 LMHGAKPDA----IEDAKNLISRAKNAGMSPEQAMAAA----RSNREKEAASLYERYQAR 172

Query: 184 CERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGG 243
                 +DF +L+   + +   +  ++  ++ R  ++LVDE QDTN  QY  L++LA   
Sbjct: 173 LTTFNAVDFDDLIRLPVQILEANEEIVMGWRERIGYLLVDECQDTNDAQYRLLKMLAGPR 232

Query: 244 DSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANN 303
            +   VGDDDQSIY WRGA  EN+ Q   D+P  E+I+LEQNYR +  +L+AANALIA+N
Sbjct: 233 GNFTCVGDDDQSIYAWRGANPENLQQMGRDYPALEIIKLEQNYRCSNRVLRAANALIAHN 292

Query: 304 SGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNAR----NEIAILYRS 359
                K LW+D  +GE + ++   +   EA  V   I  L   G A+    ++  IL+R 
Sbjct: 293 PHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFL---GTAKQVPWSDFCILFRG 349

Query: 360 NAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPR 419
           N QSR LE+AL   R+PY + GG  F ER E+K+ +++LRLI    +DAA  R +  P R
Sbjct: 350 NFQSRPLEKALQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPEDDAAFLRAVQSPKR 409

Query: 420 GIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMP 479
            +G  ++  + E A    + M  A   + A + L  RAA+ L AF +++  +      +P
Sbjct: 410 EVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANGLSAFTDILRDMREHSATLP 469

Query: 480 LHTMTQTTIEQSGLIT-YHQEEKGEKG-QARVENLEELVSAARNFESTDEDADLSPLSAF 537
              + +T  ++SGL+     + K E G Q R  NL+EL   A  FE     A  S L+A 
Sbjct: 470 AGELVRTLADKSGLLNDLRNQSKDEAGFQRRKRNLDEL---AEWFEGGPRGASASDLAAQ 526

Query: 538 LGHASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEE 597
           L  A L   D   D+  + +++MT+H++KGLEF YVF+VG E+G+ PH++SLEE G L+E
Sbjct: 527 L--ALLSRND--KDDGGNQVRMMTMHASKGLEFRYVFIVGCEDGVLPHEVSLEE-GNLQE 581

Query: 598 ERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQ 645
           ERRL YVGITRA +QL M+Y++  R +G     K SRF  EIPA  +Q
Sbjct: 582 ERRLLYVGITRAKQQLWMSYSKLTRKFGEHVRLKPSRFFDEIPAAELQ 629